Gene Slin_0380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_0380 
Symbol 
ID8724108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp480343 
End bp482109 
Gene Length1767 bp 
Protein Length588 aa 
Translation table11 
GC content54% 
IMG OID 
Productprotein of unknown function DUF885 
Protein accessionYP_003385243 
Protein GI284035313 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.550546 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTTTT CCATTCGTCA ATGCGCTGGT CTCAGCCTGG CCTTTATCTG CTTACACCTA 
TCGCTCAGGG CACAAACGCC GTCGGAGCAA CTTCGTCAGG TTATCGACAG CACCTGGGCG
TTTGAACTGC GGGAACACCC ATTGACGGCC GTTTTTGCGG GCAAAAAGAC CCAGATCGAA
AGCCTGGGAT CTTATACCGA AGCCGCCATG GCTCGGCAAA CCGCTTTTTA CCGGAATCAG
CTGGCCAAGC TCAACGCCAT TCCATCGGCA GCCCTTTCGG GACCCGAGCG CGTCAATGCC
GAACTACTCC GGTACACAAT GGAAGACGAT ATTGAACAGT ACAACCTGAA AGGGTATCTG
AATCCCTTCA CCTCCGACTC CGGTCCGCAT ACGTCTTTAC CGTTTATATC CAACTATCTC
ACCTTCCGTA CCGCAGCCGA TTATGAAAGC TATATCAAAC TACTTTACAC CTTCCCGGCC
TACCTCTCGG ATGTCGTAAC CCTGTTGCGC GAAGGGTTAC GCACGGGTAT GACGGCCCCT
AAAATCACGC TGAAAGGCTA CGAAATAACG TACAGAAACC ACATTGTTAC GGACCCCACC
CGCAGTGTTT TTTACGGGCC ATTCCTGCAC TTTCCGGCGT CGATCAGCCC CGAAGAGCAG
GCGCGTTTAC AGCAGGCCGG TCAGAAAGCG GTTATGGACG GCGTGGTTAA AGGCTATACT
ATGTTCGGTG CCTTTATGGA TACAGCCTAT TTGCCGGGTG CCCGCACCAC GCTGGCCGCC
AATGCGTTAC CCAACGGCAC CGCGTTTTAT CAGCAGCGTA TCCGCTATTA CACAACCCTC
GACCTATCGG CCGATGCCGA TGCCATTCAC CAGTTAGGCT TACAGGAGGT AGCCCGGATT
CAGGCGGAGA TGCAGGCACT CATCACGCAA ACCGGGTTTA AGGGTTCGTT TCAGGAGTTT
CTGAAGTTTC TGCGTACTGA CCCTCAGTTC TACGCCAAAA CGCCCGTACA ACTCCTTAAA
GAAGCCAGTT ACATTGCCAA ACAGGCCGAC GATAAGCTGC CGGCGTTTTT TGGCAAACTT
CCCCGGCAAC CGTATGGCGT TGCTCCCGTT CCCGACGCTC TGGCGCCCAA ATACACCAGC
GGGCGATACG TGGGAGCGCC CATCAGCAGC AAAACACCGG GCTACTACTG GGTCAATACG
TACAATCTGG CAAGTCGGCC GTTGTACACA CTGGAAGCAC TGACCCTGCA CGAAGCCGTA
CCGGGCCATC ACCTGCAATC GGCCTTATCG CAGGAATTGA CCGGCCTGCC CGACTTCCGG
AAACGCCTTT ACGTCGATTC GTTCGGCGAG GGCTGGGGCC TGTACTGCGA ATGGCTGGGT
AAAGAGATGG GCTTCTACAA AGATCCGTAC AGCGATTTTG GGCGACTCAC CTTCGAAATG
TGGCGGGCCT GCCGGTTGGT AGTCGACACG GGTATCCATA CAAAAGGCTG GACCCGGCAG
CAGGTAATCG ACTATTTATC ATCCCATACG GCCCTGTCTA TCCACGACTG CACCACCGAA
ACAGACCGAT ACATCTCCTG GCCCGGTCAG GCTTTGGCCT ATAAAATTGG CGAGTTAAAA
ATCAAGGAAC TACGACAGAA GGCGCAAAAG GCACTTGGCG ACAAGTTTGA TGTACGCGTT
TTCCATGACC TTATTTTAAG CCAGGGCACC GTAACCATGC CGATCCTCGA ACGCATTGTC
GATGAATACA TTAAGGCTGC CCGATAG
 
Protein sequence
MSFSIRQCAG LSLAFICLHL SLRAQTPSEQ LRQVIDSTWA FELREHPLTA VFAGKKTQIE 
SLGSYTEAAM ARQTAFYRNQ LAKLNAIPSA ALSGPERVNA ELLRYTMEDD IEQYNLKGYL
NPFTSDSGPH TSLPFISNYL TFRTAADYES YIKLLYTFPA YLSDVVTLLR EGLRTGMTAP
KITLKGYEIT YRNHIVTDPT RSVFYGPFLH FPASISPEEQ ARLQQAGQKA VMDGVVKGYT
MFGAFMDTAY LPGARTTLAA NALPNGTAFY QQRIRYYTTL DLSADADAIH QLGLQEVARI
QAEMQALITQ TGFKGSFQEF LKFLRTDPQF YAKTPVQLLK EASYIAKQAD DKLPAFFGKL
PRQPYGVAPV PDALAPKYTS GRYVGAPISS KTPGYYWVNT YNLASRPLYT LEALTLHEAV
PGHHLQSALS QELTGLPDFR KRLYVDSFGE GWGLYCEWLG KEMGFYKDPY SDFGRLTFEM
WRACRLVVDT GIHTKGWTRQ QVIDYLSSHT ALSIHDCTTE TDRYISWPGQ ALAYKIGELK
IKELRQKAQK ALGDKFDVRV FHDLILSQGT VTMPILERIV DEYIKAAR