Gene Slin_0142 details

Gene Information

• Locus tag: Slin_0142
• ID: 8723870
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 175822
• End bp: 179358
• Gene Length: 3537 bp
• Protein Length: 1178 aa
• Translation table: 11
• GC content: 50%
• Product: PAS/PAC sensor signal transduction histidine kinase
• Protein accession: YP_003385011
• Protein GI: 284035081

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 31
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAACTTC CTTTTCAGAC TGTACACATA ACCGGCCTTG CTCCAACGTC TGCTCCGCGT 
AACTTGTTCT TCTTTGCGCC CGTATACAAT GAACATGGCG AACTGGTTGA TTTGCAGCGT 
CGTATGGCCG CACCATCAAC GCCATCCGAT TATCTGGCAG GAACCTGCTT ATCCGACTGG 
GTCGCCCCCT CGGCCGGGGC TGTGCTCAAC CGGCTATGGT CGTTGCTGGA ACAGGGCACC 
GTTTGCCGAC TGACTTATCA ACCGGCACCC GATCAAACAA GTCAACTGCT CATTACGCCG 
ATGGAGGGCG GATACCTGGT TGAACTGCTT GCCGACAACC CGGCCGATGC TATTTCCGTT 
AGTACTGAAT CCGAAATTGT GTCCGTTGGG CAGACCATTG AGCAGCGTAC CGATTATTCT 
GCCCAGGCCG GGGCTCGTGG TTTATCGAAA CAGGCCTCTT CGCTGGATGC TACCAACCAG 
TTACTAGAAG CCATTGTGTC GAATACACCC GTTGGACTTG CCCTTCTACG GCCCGTTTGG 
CAAAGCGGAT GCCTAATAGA TTTTAGCTAC TTATGGACCA ATCCAGCCCA TGCGGCTCTT 
ATCGGCTATA GCATCATTCA ACTGGCCGGG CAGCGATTTA AAGCGTTACA CCCTTCGGCT 
GCCAGCGCCG GCCTGTTCGA TCGATTGGCC GATGTTGCGC AAACCGGACA GTCGTTGCAC 
TACCAAAAGC AGGTTCAGCA TGATGGTCTT TCCTTATGGG GTGAGTTTAC GATCATTCGG 
GTGGGTGAAA ACGTGCTGTT TACCGTCATG GATATTTCGC CCCTGATGGA GGCTAAGGCC 
CTGCTGCGTA AAAAGAACAG CCAGCTTGAA AAAGGTATTG CCGAGCGCAC CAAACAGGTT 
CGGCAGCTGT CTACACTGCA AAACGCCATT CTCAAGCATG CAGGGCAGGC CATTATATCG 
ACCAATTCCG ACGGTATTGT GCAAACGGTT AATCAGGCCA CTGAAACACT ACTGGGTTTT 
TCGGCTAGTG AGCTTATTGG TAAGGTGGCT CGCCTGAAGT CTGAAAGTAC CCACAGCTCG 
TTGCCGGTAA TTACATTTTC CCCGTACGAT TCTGAGGAAG TGCACAACTT CTTTGCCCAG 
CCGACAGTGG CAGAATATGG CTATGTACAG CAGGAATGTT TGCTGGCAAC CCGAAACGGA 
CGTCTGGCGC CGGTTTTGCT GACGGTCAGC CAGTTGAAGA ACGAGGACGG CTCGGTTCTG 
GGATACATGG GTATTGCCAC CGATATATCG GCTCTGAAAC TGGCCGAAGC CAAGCTGCGT 
CAAAAAAATC AGATACTGGA TACGTTTTTT GCCGGTGCGC TGGATATGCA CTGTATTGCC 
GACCGCAAGG GTTTTCTGCT GGAAGTCAAC CACGCGTTTC AGGATGTGAT GGGTTATTCG 
GCCAGTGAAC TGAAAACGAT TCCGTTTTTG CAACTGATTC ATCCCGCCGA AAAGGCAATG 
GTGTCCACTG AAGTACTGAA AAAGAGTCAG CAGGAGCCGG TTCGTAATCG TATTAACAAG 
TGGCGTTGTA AAGATGGTAC GTATCGGATT ATTGAGTGGA GTGCCATCGG AGTTGACGGA 
TTGGTGTATG GCTCGGCTCG GGATATTACC GACCGGCAGG CTGCCGAAGA TCAGCTCTAC 
CAACTCCACG AACGGCTTCA GTTAGCCACC AAGGCGGCCG GGCAGGGTAT CTGGGAAAAT 
GACTTAATCA ACGGTAAGGT AATCTGGGAT GAACGCCTTT GGGAACTGCA CGGGTTAACA 
TTGCCCGTAC GGCCATTGAC CTTTGCTGAC TTTTTATCGT TCGTCCATCC TGACGATTTG 
CCCGCTCTGA TGGCAAAAGC CCATACCGAA CTCGTTGGGA AAGAAGACGC GGTTACTAAT 
GTATACCGGA TCGTTTGCCC AAATGGTATG GTACGGTACC TGGAAACCAA TGGGCGCATT 
ATTCGCGATT CGTCAGGGAA GGCGATCCGG CTTATTGGTG TCGCCTGGGA TGTGACGCGC 
CGGAAGCTGG ACGAAGAAAA CCTCCGGACC AGTGAACAAC GGTATCGGTC GCTCGTGGAT 
CACCTGGATA CAATTGTTTT TCAAACCGAT GCCAAAGGGA AATGGGTTTA TCTGAACCCA 
GCCTGGGAGG TGGTTACGGG CTTCTCGGTT GAAGAATCGC TGGGAGGGTA TTTCCTGGAC 
TCGATTCTAC CCGAAGACCA TACCGAAACC CGGCAGTTGT TTGAAGAAAT CAAAGCGGGC 
CAGCGAATGG GTGTCAGGCA TACCATTCGC TACATTCGTA AAGGGGGTGG CTATCGCTGG 
ATCGACGTAA ACGCCCAGGT GTTACTGCGT GACGGTCATG TACGGATGGG CGTAACCGGG 
ACATTGACGG ATATTACGGA GCGAAAAATG GCCGAAGAAG CGATTCAGGA AAGCGAACAG 
CGTTTTCGTG AGATTGCCGA AAATGTCGAT GAAGTCTTTT GTATACTCGA TAGTAAGAAG 
CCCCGGTTTC TATATGTAAA TCCTGCTTTT GAGAAGTTCA CGGGCGTATC CTCGCCCGAA 
ATTTACCGGA ACTCTTCGTT GTTTCTGCCG CGCATTGTCG AAGAAGACCG AAGCCTTATT 
CAAACGATAT TCCAGAACTC TGTTTCAGGT AGCGAACTGA CCTTCCGGGC TCGGCACCAG 
GATGGAAGCC TTCGCTGGTT AAACGCCAGG GTATTCGGCG TTACCAATGA GGCCGGTGTG 
CTTATCCGTC GTATTGGTGT GGCCACTGAT ATTACGACGG CCATTGAAAA AGAACAAATT 
CTGGAAGCTT CGCTGCAAAA CGAACGAACC TTAAATACGC TTAAATCGCA GTTTATTACA 
ACGGCCTCGC ATGAGTTCAG GACGCCCCTG ATGGGCATCA GTTCCAGCAC CGAACTGGTA 
AAGCATTATA TGGCCCGGGA AGATATACGG CCGGTATTGC CAATCATTAA CAAACACCTC 
ACGGCCATTC TTACAAAAGT AGCTTCGCTG AATGAGTTGA TTGGCGATAC ACTGACGCTG 
AGCAAAATAG AACAGGGGAA AATAGACGTA CAGCTGACCA GCACCGATCT GGCGGCACTC 
TGTAAATCGC TGGTTGCTTC TACCTCTGCC GATTCTAAAG ATAAGCGTCA GATCGATTTT 
CAGGTCATCG GAAAAGACGT AGCGCTGCTG GTGGATAAAA AGTTGATCAA CCATATCCTG 
ACCAACTTAC TGATGAATGC CATTAAGTTT TCCACGAAAA GCGTAAGCCT GACGCTTACT 
TATGGCCTGA CGGATGTGAA AATTGCCGTG AGCGATCAGG GCATTGGCAT ACCTAAAAAA 
GACCTGCCTC ATTTATTTGA TAAATTTTTT AGGGCTGGCA ATGCCACTAA TTATCAGGGG 
AGCGGTCTTG GACTGGCCAT TTGTCAGGAA TACATAAACC TGATGCAAGG TCAGATCGGT 
GTAGCGAGTA AAGAAGGCGC AGGAACTACG TTTACCATTA CACTTCCGTA TGCTTAG 

 

Protein sequence

MKLPFQTVHI TGLAPTSAPR NLFFFAPVYN EHGELVDLQR RMAAPSTPSD YLAGTCLSDW 
VAPSAGAVLN RLWSLLEQGT VCRLTYQPAP DQTSQLLITP MEGGYLVELL ADNPADAISV 
STESEIVSVG QTIEQRTDYS AQAGARGLSK QASSLDATNQ LLEAIVSNTP VGLALLRPVW 
QSGCLIDFSY LWTNPAHAAL IGYSIIQLAG QRFKALHPSA ASAGLFDRLA DVAQTGQSLH 
YQKQVQHDGL SLWGEFTIIR VGENVLFTVM DISPLMEAKA LLRKKNSQLE KGIAERTKQV 
RQLSTLQNAI LKHAGQAIIS TNSDGIVQTV NQATETLLGF SASELIGKVA RLKSESTHSS 
LPVITFSPYD SEEVHNFFAQ PTVAEYGYVQ QECLLATRNG RLAPVLLTVS QLKNEDGSVL 
GYMGIATDIS ALKLAEAKLR QKNQILDTFF AGALDMHCIA DRKGFLLEVN HAFQDVMGYS 
ASELKTIPFL QLIHPAEKAM VSTEVLKKSQ QEPVRNRINK WRCKDGTYRI IEWSAIGVDG 
LVYGSARDIT DRQAAEDQLY QLHERLQLAT KAAGQGIWEN DLINGKVIWD ERLWELHGLT 
LPVRPLTFAD FLSFVHPDDL PALMAKAHTE LVGKEDAVTN VYRIVCPNGM VRYLETNGRI 
IRDSSGKAIR LIGVAWDVTR RKLDEENLRT SEQRYRSLVD HLDTIVFQTD AKGKWVYLNP 
AWEVVTGFSV EESLGGYFLD SILPEDHTET RQLFEEIKAG QRMGVRHTIR YIRKGGGYRW 
IDVNAQVLLR DGHVRMGVTG TLTDITERKM AEEAIQESEQ RFREIAENVD EVFCILDSKK 
PRFLYVNPAF EKFTGVSSPE IYRNSSLFLP RIVEEDRSLI QTIFQNSVSG SELTFRARHQ 
DGSLRWLNAR VFGVTNEAGV LIRRIGVATD ITTAIEKEQI LEASLQNERT LNTLKSQFIT 
TASHEFRTPL MGISSSTELV KHYMAREDIR PVLPIINKHL TAILTKVASL NELIGDTLTL 
SKIEQGKIDV QLTSTDLAAL CKSLVASTSA DSKDKRQIDF QVIGKDVALL VDKKLINHIL 
TNLLMNAIKF STKSVSLTLT YGLTDVKIAV SDQGIGIPKK DLPHLFDKFF RAGNATNYQG 
SGLGLAICQE YINLMQGQIG VASKEGAGTT FTITLPYA