Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_0142 |
Symbol | |
ID | 8723870 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 175822 |
End bp | 179358 |
Gene Length | 3537 bp |
Protein Length | 1178 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_003385011 |
Protein GI | 284035081 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTTC CTTTTCAGAC TGTACACATA ACCGGCCTTG CTCCAACGTC TGCTCCGCGT AACTTGTTCT TCTTTGCGCC CGTATACAAT GAACATGGCG AACTGGTTGA TTTGCAGCGT CGTATGGCCG CACCATCAAC GCCATCCGAT TATCTGGCAG GAACCTGCTT ATCCGACTGG GTCGCCCCCT CGGCCGGGGC TGTGCTCAAC CGGCTATGGT CGTTGCTGGA ACAGGGCACC GTTTGCCGAC TGACTTATCA ACCGGCACCC GATCAAACAA GTCAACTGCT CATTACGCCG ATGGAGGGCG GATACCTGGT TGAACTGCTT GCCGACAACC CGGCCGATGC TATTTCCGTT AGTACTGAAT CCGAAATTGT GTCCGTTGGG CAGACCATTG AGCAGCGTAC CGATTATTCT GCCCAGGCCG GGGCTCGTGG TTTATCGAAA CAGGCCTCTT CGCTGGATGC TACCAACCAG TTACTAGAAG CCATTGTGTC GAATACACCC GTTGGACTTG CCCTTCTACG GCCCGTTTGG CAAAGCGGAT GCCTAATAGA TTTTAGCTAC TTATGGACCA ATCCAGCCCA TGCGGCTCTT ATCGGCTATA GCATCATTCA ACTGGCCGGG CAGCGATTTA AAGCGTTACA CCCTTCGGCT GCCAGCGCCG GCCTGTTCGA TCGATTGGCC GATGTTGCGC AAACCGGACA GTCGTTGCAC TACCAAAAGC AGGTTCAGCA TGATGGTCTT TCCTTATGGG GTGAGTTTAC GATCATTCGG GTGGGTGAAA ACGTGCTGTT TACCGTCATG GATATTTCGC CCCTGATGGA GGCTAAGGCC CTGCTGCGTA AAAAGAACAG CCAGCTTGAA AAAGGTATTG CCGAGCGCAC CAAACAGGTT CGGCAGCTGT CTACACTGCA AAACGCCATT CTCAAGCATG CAGGGCAGGC CATTATATCG ACCAATTCCG ACGGTATTGT GCAAACGGTT AATCAGGCCA CTGAAACACT ACTGGGTTTT TCGGCTAGTG AGCTTATTGG TAAGGTGGCT CGCCTGAAGT CTGAAAGTAC CCACAGCTCG TTGCCGGTAA TTACATTTTC CCCGTACGAT TCTGAGGAAG TGCACAACTT CTTTGCCCAG CCGACAGTGG CAGAATATGG CTATGTACAG CAGGAATGTT TGCTGGCAAC CCGAAACGGA CGTCTGGCGC CGGTTTTGCT GACGGTCAGC CAGTTGAAGA ACGAGGACGG CTCGGTTCTG GGATACATGG GTATTGCCAC CGATATATCG GCTCTGAAAC TGGCCGAAGC CAAGCTGCGT CAAAAAAATC AGATACTGGA TACGTTTTTT GCCGGTGCGC TGGATATGCA CTGTATTGCC GACCGCAAGG GTTTTCTGCT GGAAGTCAAC CACGCGTTTC AGGATGTGAT GGGTTATTCG GCCAGTGAAC TGAAAACGAT TCCGTTTTTG CAACTGATTC ATCCCGCCGA AAAGGCAATG GTGTCCACTG AAGTACTGAA AAAGAGTCAG CAGGAGCCGG TTCGTAATCG TATTAACAAG TGGCGTTGTA AAGATGGTAC GTATCGGATT ATTGAGTGGA GTGCCATCGG AGTTGACGGA TTGGTGTATG GCTCGGCTCG GGATATTACC GACCGGCAGG CTGCCGAAGA TCAGCTCTAC CAACTCCACG AACGGCTTCA GTTAGCCACC AAGGCGGCCG GGCAGGGTAT CTGGGAAAAT GACTTAATCA ACGGTAAGGT AATCTGGGAT GAACGCCTTT GGGAACTGCA CGGGTTAACA TTGCCCGTAC GGCCATTGAC CTTTGCTGAC TTTTTATCGT TCGTCCATCC TGACGATTTG CCCGCTCTGA TGGCAAAAGC CCATACCGAA CTCGTTGGGA AAGAAGACGC GGTTACTAAT GTATACCGGA TCGTTTGCCC AAATGGTATG GTACGGTACC TGGAAACCAA TGGGCGCATT ATTCGCGATT CGTCAGGGAA GGCGATCCGG CTTATTGGTG TCGCCTGGGA TGTGACGCGC CGGAAGCTGG ACGAAGAAAA CCTCCGGACC AGTGAACAAC GGTATCGGTC GCTCGTGGAT CACCTGGATA CAATTGTTTT TCAAACCGAT GCCAAAGGGA AATGGGTTTA TCTGAACCCA GCCTGGGAGG TGGTTACGGG CTTCTCGGTT GAAGAATCGC TGGGAGGGTA TTTCCTGGAC TCGATTCTAC CCGAAGACCA TACCGAAACC CGGCAGTTGT TTGAAGAAAT CAAAGCGGGC CAGCGAATGG GTGTCAGGCA TACCATTCGC TACATTCGTA AAGGGGGTGG CTATCGCTGG ATCGACGTAA ACGCCCAGGT GTTACTGCGT GACGGTCATG TACGGATGGG CGTAACCGGG ACATTGACGG ATATTACGGA GCGAAAAATG GCCGAAGAAG CGATTCAGGA AAGCGAACAG CGTTTTCGTG AGATTGCCGA AAATGTCGAT GAAGTCTTTT GTATACTCGA TAGTAAGAAG CCCCGGTTTC TATATGTAAA TCCTGCTTTT GAGAAGTTCA CGGGCGTATC CTCGCCCGAA ATTTACCGGA ACTCTTCGTT GTTTCTGCCG CGCATTGTCG AAGAAGACCG AAGCCTTATT CAAACGATAT TCCAGAACTC TGTTTCAGGT AGCGAACTGA CCTTCCGGGC TCGGCACCAG GATGGAAGCC TTCGCTGGTT AAACGCCAGG GTATTCGGCG TTACCAATGA GGCCGGTGTG CTTATCCGTC GTATTGGTGT GGCCACTGAT ATTACGACGG CCATTGAAAA AGAACAAATT CTGGAAGCTT CGCTGCAAAA CGAACGAACC TTAAATACGC TTAAATCGCA GTTTATTACA ACGGCCTCGC ATGAGTTCAG GACGCCCCTG ATGGGCATCA GTTCCAGCAC CGAACTGGTA AAGCATTATA TGGCCCGGGA AGATATACGG CCGGTATTGC CAATCATTAA CAAACACCTC ACGGCCATTC TTACAAAAGT AGCTTCGCTG AATGAGTTGA TTGGCGATAC ACTGACGCTG AGCAAAATAG AACAGGGGAA AATAGACGTA CAGCTGACCA GCACCGATCT GGCGGCACTC TGTAAATCGC TGGTTGCTTC TACCTCTGCC GATTCTAAAG ATAAGCGTCA GATCGATTTT CAGGTCATCG GAAAAGACGT AGCGCTGCTG GTGGATAAAA AGTTGATCAA CCATATCCTG ACCAACTTAC TGATGAATGC CATTAAGTTT TCCACGAAAA GCGTAAGCCT GACGCTTACT TATGGCCTGA CGGATGTGAA AATTGCCGTG AGCGATCAGG GCATTGGCAT ACCTAAAAAA GACCTGCCTC ATTTATTTGA TAAATTTTTT AGGGCTGGCA ATGCCACTAA TTATCAGGGG AGCGGTCTTG GACTGGCCAT TTGTCAGGAA TACATAAACC TGATGCAAGG TCAGATCGGT GTAGCGAGTA AAGAAGGCGC AGGAACTACG TTTACCATTA CACTTCCGTA TGCTTAG
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Protein sequence | MKLPFQTVHI TGLAPTSAPR NLFFFAPVYN EHGELVDLQR RMAAPSTPSD YLAGTCLSDW VAPSAGAVLN RLWSLLEQGT VCRLTYQPAP DQTSQLLITP MEGGYLVELL ADNPADAISV STESEIVSVG QTIEQRTDYS AQAGARGLSK QASSLDATNQ LLEAIVSNTP VGLALLRPVW QSGCLIDFSY LWTNPAHAAL IGYSIIQLAG QRFKALHPSA ASAGLFDRLA DVAQTGQSLH YQKQVQHDGL SLWGEFTIIR VGENVLFTVM DISPLMEAKA LLRKKNSQLE KGIAERTKQV RQLSTLQNAI LKHAGQAIIS TNSDGIVQTV NQATETLLGF SASELIGKVA RLKSESTHSS LPVITFSPYD SEEVHNFFAQ PTVAEYGYVQ QECLLATRNG RLAPVLLTVS QLKNEDGSVL GYMGIATDIS ALKLAEAKLR QKNQILDTFF AGALDMHCIA DRKGFLLEVN HAFQDVMGYS ASELKTIPFL QLIHPAEKAM VSTEVLKKSQ QEPVRNRINK WRCKDGTYRI IEWSAIGVDG LVYGSARDIT DRQAAEDQLY QLHERLQLAT KAAGQGIWEN DLINGKVIWD ERLWELHGLT LPVRPLTFAD FLSFVHPDDL PALMAKAHTE LVGKEDAVTN VYRIVCPNGM VRYLETNGRI IRDSSGKAIR LIGVAWDVTR RKLDEENLRT SEQRYRSLVD HLDTIVFQTD AKGKWVYLNP AWEVVTGFSV EESLGGYFLD SILPEDHTET RQLFEEIKAG QRMGVRHTIR YIRKGGGYRW IDVNAQVLLR DGHVRMGVTG TLTDITERKM AEEAIQESEQ RFREIAENVD EVFCILDSKK PRFLYVNPAF EKFTGVSSPE IYRNSSLFLP RIVEEDRSLI QTIFQNSVSG SELTFRARHQ DGSLRWLNAR VFGVTNEAGV LIRRIGVATD ITTAIEKEQI LEASLQNERT LNTLKSQFIT TASHEFRTPL MGISSSTELV KHYMAREDIR PVLPIINKHL TAILTKVASL NELIGDTLTL SKIEQGKIDV QLTSTDLAAL CKSLVASTSA DSKDKRQIDF QVIGKDVALL VDKKLINHIL TNLLMNAIKF STKSVSLTLT YGLTDVKIAV SDQGIGIPKK DLPHLFDKFF RAGNATNYQG SGLGLAICQE YINLMQGQIG VASKEGAGTT FTITLPYA
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