Gene Slin_0108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_0108 
Symbol 
ID8723836 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp130688 
End bp132694 
Gene Length2007 bp 
Protein Length668 aa 
Translation table11 
GC content55% 
IMG OID 
Producthypothetical protein 
Protein accessionYP_003384979 
Protein GI284035049 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0893554 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTAATT CCATTCGTTT ACTTTTTCTG GCCTGTTTCC TGACCGGTGA GCTAGTCGCA 
CAGACTTCGC CCGTTACGGT CGATATCTGC GTGTATGGCG GCTCGTCGGC GGGGGTAATC
GCGGCTTATA CCGCCCGTCA ACTGGGTAAA TCTGTTATCC TGATCGAGCC GGGGCGTCAT
CTCGGCGGCC TCACGACCGG CGGGCTGGGC TACACCGACA TTGGCAATAA GTACGCCATC
TCCGGCATTG CCCGCGATTA CTACCGTCAG ATTGGCAAGC ATTACGGGAA GTTCGAACAA
TGGATCTTTG AACCCCATGT GGCGGAAGAT CTCTTTAAAT CATACATCAA ACGGGGAGAT
GTCAACGTCC TTTACGAACA TCGGCTTCAG TCCGTAAAAA AGCAGGGCAC AGCCATCCAG
AGCATTACCC TGGAGTCCTC CTCGGCGGGA AGTGCTACCC GAACCGTTAA CGCCAAAGTC
TTTCTCGATT GTACTTACGA AGGCGATCTG CTGGCCAAAG CGGGTGTCAG TTATACCGTT
GGCCGCGAAG ACAACAAGAC CTATGGCGAA ACCTACAACG GTTTTCAGTT GCTGGACAAG
CACCAGTTTG CCGATGGTGT CGACCCGTAT AAAATACCCG GAAAGCCGGA AAGTGGCCTG
TTATGGGGCA TCAGTACGGC AAAGGTGCTG CCAACGGGTA CGGGAAATAA AGACGTGCAG
GCGTATAACT TCCGCATTTG CCTGAGCAGC GACCCGGCCA ACAGCATCCC CATTACCCGG
CCCGAAGGGT ATGATTCAAC CCGTTATGAA CTGCTGCTGC GAGCCATCGA CAAGAACCCA
AAGCTCGCGT TCAACACCAT CCTCAAACCC GACCGGATGC CGAATCAGAA GACGGATATC
AACAATAACG GCCCGTTTTC AACCGATATG ATTGGCGTGA ACTACGACTT CCCCGAAGCC
AGTTATGCCC GTCGGGCGGC TATTCAGCGG GAGCACGAGC TGTATAACAA AGGGTTACTG
TACTTCATCG GGCACGACCC CCGGATGCGC AAAGACATCC AGACCGAAAT GCTCAAATTT
GGCTACCCGA AAGATGAATA CACCGACTCG GGCAACTGGT CGACGCAGAT GTACGTTCGC
GAAGCCCGGC GTATGGTGGG CGCGCACGTG ATGACCCAGG CCAATTGTCA GGGCCGTGAG
GTAGTGCCGG ATGGCGTGGG CATGGCTGCT TACACAATGG ATTCGCACAA TTGCCAGCGG
CTGGTGGTTG AGAAAAACGG CATGAAAATG GTCAAGAACG AAGGCGACGT ACAGGTGGGT
GGTTTCCCGC CTTACCCGAT TTCGTACCGT TGCCTGACGC CCAAAGCGAC CGAATGCACG
AACCTGCTGG TGCCCGTTTG CTTGTCGGCG AGCCACATTG CCTACGGCTC TATCCGTATG
GAACCCGTTT TTATGGTGCT GGCGCAATCG TCGGCGGTGG CCGCGGGCAT GGCCATCGAC
GGGAAAACAT CGGTGCAGGG CGTTGATATA AAAAAGTTAC AGAGTCAGCT AAAAGCCAAC
CCGTTAGCCG ATGGTAGTAC GCCCGAAATC CTGGTTGACA ACGACGACCC GACCCAAACA
GCCCGCACCG GCGAGTGGAC GCGGGAAAAC AACCCGAAAG GCGCGTATGG CCCCAGTTAT
TTCACCACAG CGGGTAGCGG GTCGGGTATG AAAACCGTCC GGTTCAGCCC GGCGGTGACC
AAAGCGGGTA TCTACCACGC GTACATATAC ATCCCTAAAC TGACCGGTGC TTCCAGTAAG
ACGAATCTGA TCGTATCGGA TGGTAATCAA CCCAAACCCA TCACCATCCG GGAGTCGGAT
ATTCGGGTGG AGGGGCAGAC ATCGGGTGAG TGGGTATCGC TTGGATCATA CAAGCTGTCG
CCGGGTAAGA AAAGCTTCGT TGAGGTATCG ACAAAAGACG CCGACGGAAT TGTGGTGGCC
GATGCCGTGC TGTTCGTGCC GAATTGA
 
Protein sequence
MRNSIRLLFL ACFLTGELVA QTSPVTVDIC VYGGSSAGVI AAYTARQLGK SVILIEPGRH 
LGGLTTGGLG YTDIGNKYAI SGIARDYYRQ IGKHYGKFEQ WIFEPHVAED LFKSYIKRGD
VNVLYEHRLQ SVKKQGTAIQ SITLESSSAG SATRTVNAKV FLDCTYEGDL LAKAGVSYTV
GREDNKTYGE TYNGFQLLDK HQFADGVDPY KIPGKPESGL LWGISTAKVL PTGTGNKDVQ
AYNFRICLSS DPANSIPITR PEGYDSTRYE LLLRAIDKNP KLAFNTILKP DRMPNQKTDI
NNNGPFSTDM IGVNYDFPEA SYARRAAIQR EHELYNKGLL YFIGHDPRMR KDIQTEMLKF
GYPKDEYTDS GNWSTQMYVR EARRMVGAHV MTQANCQGRE VVPDGVGMAA YTMDSHNCQR
LVVEKNGMKM VKNEGDVQVG GFPPYPISYR CLTPKATECT NLLVPVCLSA SHIAYGSIRM
EPVFMVLAQS SAVAAGMAID GKTSVQGVDI KKLQSQLKAN PLADGSTPEI LVDNDDPTQT
ARTGEWTREN NPKGAYGPSY FTTAGSGSGM KTVRFSPAVT KAGIYHAYIY IPKLTGASSK
TNLIVSDGNQ PKPITIRESD IRVEGQTSGE WVSLGSYKLS PGKKSFVEVS TKDADGIVVA
DAVLFVPN