Gene Slin_0034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_0034 
Symbol 
ID8723762 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp40076 
End bp41143 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content54% 
IMG OID 
ProductLytic transglycosylase catalytic 
Protein accessionYP_003384907 
Protein GI284034977 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.312775 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0969684 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGCTA TAAAACCGGG CATCGGTATG TCGGCCCTTG CGCTCCCCAA CTTCGGGGCC 
GACACGAGCC GGTCACTGTT GTCATCAGGT GGTCTGAATA ACCCCGAACT ACTTGTCGTA
GACTCGACAA AGCGCGTATT TCCAATCTAC TTTTGCGGGG AAGAGGTTCC GGTCGATGAA
CCCCGCGTAT CGCGCCGGTG GCTGCAAACC CTTCGTCTGT ACGGTGCCCA GCAGGACTTT
CTGATGGACC TTCGGTCGAG GGCGTCTACG TTCTTCCCCA TCATTGACCC TATTCTTCGT
AAGTATAAAA TCCCCCGCGA TTTCCGGTTT ATGCCTCTGG CGGAAAGTGC GCTCGACAAC
AGCAGTGTCT CCTATAAAGG GGCATCGGGC TATTGGCAGC TCATGCCGGG AACAGCCCGC
GAACTGGGAT TAACGGTAAA TAGTACGGTG GATGAACGAT ACAACCTGCA AAAAGCAACG
GTTGCCGTTT GTCGGCATCT TCACCAATTG TACCGGGAGT TAGGTTCCTG GACGCTGGTT
GCAGCCGCTT ATAACGGAGG AATCACCCAC GTTCGAAACA AAATGGAGCA GCAGGGCCAG
TCCAACTACT TCCGGCTCCG GCTGCATCGG GAAACGAGCC ATTACCTGTT CAGAATTCTG
GCGTTTAAAG AACTGCTCAG TAACCCGCGC CAGTACGCTT TGCTGGTTAG CGGAGCAACC
ATCGCCGAAC TTGTCAAGCC ATTACCGAGC TGGCATAAGC CACTTGCCTT ACCGAAGAAA
GTAAAAGACG CGCCAACAAT CGAACTGGTC GATGAGGAGT TCATGAACAC CTGGGGCCCG
CGCCCTAATA CGGCGCTAAC GCAGGCTCCA TCCGATGCAC AACAGTTTAT TGCCCAGGCC
GTTGCGGCAA AGAGTCTGCC AAACACCGAT CTTGAACAGC AGGGAAAGCA CTTACCCATA
AAAAAGTTGA TGATGGGGCT GATGGTGCTC CGGTTCCGCC GACCACGTCT CCTGGACAGG
AAGAAAGGTG AGGGCATTCG TCCCTTACAT TTCTGGGACT GGTTGTAG
 
Protein sequence
MAAIKPGIGM SALALPNFGA DTSRSLLSSG GLNNPELLVV DSTKRVFPIY FCGEEVPVDE 
PRVSRRWLQT LRLYGAQQDF LMDLRSRAST FFPIIDPILR KYKIPRDFRF MPLAESALDN
SSVSYKGASG YWQLMPGTAR ELGLTVNSTV DERYNLQKAT VAVCRHLHQL YRELGSWTLV
AAAYNGGITH VRNKMEQQGQ SNYFRLRLHR ETSHYLFRIL AFKELLSNPR QYALLVSGAT
IAELVKPLPS WHKPLALPKK VKDAPTIELV DEEFMNTWGP RPNTALTQAP SDAQQFIAQA
VAAKSLPNTD LEQQGKHLPI KKLMMGLMVL RFRRPRLLDR KKGEGIRPLH FWDWL