Gene Slin_0032 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_0032 
Symbol 
ID8723760 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp37215 
End bp38456 
Gene Length1242 bp 
Protein Length413 aa 
Translation table11 
GC content54% 
IMG OID 
ProductLytic transglycosylase catalytic 
Protein accessionYP_003384905 
Protein GI284034975 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.367331 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATGG TCGTACTGAT GTTAAGTGGT TTACTGCTGA ACATCCCTAT CTCGGCGCAA 
AAAAAGGCGA GTACGGCAAA GAACAGGCCC AATCTTTCTT CTGCTCATAA ACGTTCGTTA
AGCGGACCGG GACGTCTGCA CTTCTGCGGT GAAGTCGTAC CAACTGAACA GGGTAACGTT
TCGGCCAAGC TGGCCTTTGC CATGGCGAGC AGTTCGGGAT ATGCCCGTCG CCTGAATGCC
CTGAAGGCCC GTTCGGCTCC TTTCTTCTCC GTTATCGAGC CTATTCTTGA GCGGTACGGT
ATCCCGGATG ATTTTAAGTA CCTGCCCCTG ATCGAGAGTG CCTGGCAGGC CAACGCCGTA
TCCTCGGCCG GAGCGGTTGG CTACTGGCAG TTTATGGACG ATACCGCACA GGATATGGGG
CTGTCGATTG CCCCCGGCCA TGATGAACGC ACCAACCTCC TCAAATCAAC CGAAGCCGCC
TGCAAATACA TCAATTTCCT GTACCGCAAA TTAGGGTCAT GGACGCTTGT GGCCGCAGCC
TACAATGGGG GCGTGGGCAT GGTTCAACGG AAAATCACCA AAGTGGGCCA TCGCGATTAT
TATACCATGG CCATGAATCC CGAAACCGGC TATTATCTCT ACCGTATTCT GGCCATGAAA
CAGCTATTCA CGAATCCCTC CTATGGGATC GACGCGGTGG GCCTGATGCT GGCATCGGGT
GGTAACGCCT ACGAACAGGA GCGCGAACAG GCCCGGCGAA TGGGCTGGCT TCAGGACCAG
GAACCAGCAG TGAGCGGGAT TCCGGTCGAG TCGTTGTCGG GTCCGGATGC TTTGCTAAAC
GATCAGGTAC CAACGGGCCG ACATGAAGTG GTGGTTATGG ACAGTTTGTT AAGCAAACTA
CTTAAAAACA CGCCCAGTAG CCCCTCTGCC GTTGTTGGCG ATGTAGCTGC GCGTCTGGTA
CAGGCGGGTC AGGTGAAAGT AGGCCAAAGC TGGTCATTTG CACTCACCGA GACGGTCCAG
ATCGACGAAA GTACGCTCAA GGCGGGCGAT ATGCTTTACG CTATTATCGA TGATATTGAT
ACCTACGGCA ATCTTTTCTT TCGGGCGACC AAAGCCATCT CGGCACAAAC CAAAACGACT
ATTCCGCTTA CACTCATCGC GCTGAACCCG GCAACCGGTT TAGCCGGTAT TCCGCGCCCC
AAAGTGGTAA AACCTGGCTG GGTAGTGCAA TGGAAACTTT AA
 
Protein sequence
MRMVVLMLSG LLLNIPISAQ KKASTAKNRP NLSSAHKRSL SGPGRLHFCG EVVPTEQGNV 
SAKLAFAMAS SSGYARRLNA LKARSAPFFS VIEPILERYG IPDDFKYLPL IESAWQANAV
SSAGAVGYWQ FMDDTAQDMG LSIAPGHDER TNLLKSTEAA CKYINFLYRK LGSWTLVAAA
YNGGVGMVQR KITKVGHRDY YTMAMNPETG YYLYRILAMK QLFTNPSYGI DAVGLMLASG
GNAYEQEREQ ARRMGWLQDQ EPAVSGIPVE SLSGPDALLN DQVPTGRHEV VVMDSLLSKL
LKNTPSSPSA VVGDVAARLV QAGQVKVGQS WSFALTETVQ IDESTLKAGD MLYAIIDDID
TYGNLFFRAT KAISAQTKTT IPLTLIALNP ATGLAGIPRP KVVKPGWVVQ WKL