| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1412 |
|---|
| Symbol | rrsB |
|---|
| ID | 8710030 |
|---|
| Type | rRNA |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1589621 |
|---|
| End bp | 1591094 |
|---|
| Gene Length | 1474 bp |
|---|
| Protein Length | |
|---|
| Translation table | |
|---|
| GC content | 58% |
|---|
| IMG OID | 646483415 |
|---|
| Product | 16S ribosomal RNA |
|---|
| Protein accession | |
|---|
| Protein GI | |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTTCGTGGAG GGTTCGATTC TGGCTCAGGA TGAACGCTGG CGGCGTGCTT AACACATGCA
AGTCGAACGG GATCTGACCA GCTTGCTGGT TGGTGAGAGT GGCGAACGGG TGAGTAATGC
GTGACCAACC TGCCCCATGC TCCAGAATAG CTCTTGGAAA CGGGTGGTAA TGCTGGATGC
TCCAACTTGA CGCATGTCTT GTTGGGAAAG TGTTTAGTGG CATGGGATGG GGTCGCGTCC
TATCAGCTTG TAGGCGGGGT AATGGCCCAC CTAGGCTTCG ACGGGTAGCC GGCCTGAGAG
GGCGGACGGC CACATTGGGA CTGAGATACG GCCCAGACTC CTACGGGAGG CAGCAGTGGG
GAATATTGCG CAATGGGGGA AACCCTGACG CAGCGACGCC GCGTGCGGGA TGAAGGCCTT
CGGGTTGTAA ACCGCTTTTG ATTGGGAGCA AGCTTTCGGG TGAGTGTACC TTTCGAATAA
GCGCCGGCTA ACTACGTGCC AGCAGCCGCG GTAATACGTA GGGCGCAAGC GTTATCCGGA
ATTATTGGGC GTAAAGAGCT TGTAGGCGGT TCGTCGCGTC TGGTGTGAAA GCCCATCGCT
TAACGGTGGG TCTGCGCCGG GTACGGGCGG GCTAGAGTGC AGTAGGGGAG ACTGGAATTC
CCGGTGTAAC GGTGGAATGT GTAGATATCG GGAAGAACAC CAATGGCGAA GGCAGGTCTC
TGGGCTGTTA CTGACGCTGA GAAGCGAAAG CGTGGGGAGC GAACAGGATT AGATACCCTG
GTAGTCCACG CCGTAAACGG TGGACGCTGG ATGTGGGGCC CATTCCACGG GTTCCGTGTC
GGAGCTAACG CGTTAAGCGT CCCGCCTGGG GAGTACGGCC GCAAGGCTAA AACTCAAAGA
AATTGACGGG GGCCCGCACA AGCGGCGGAG CATGCGGATT AATTCGATGC AACGCGAAGA
ACCTTACCTG GGCTTGACAT GTGCCTGTCG ACTGCAGAGA TGTGGTTTCC CTTCGGGGCA
GGTTCACAGG TGGTGCATGG TCGTCGTCAG CTCGTGTCGT GAGATGTTGG GTTAAGTCCC
GCAACGAGCG CAACCCTCGC CCTGTGTTGC CAGCGGGTTA TGCCGGGAAC TCACGGGGGA
CCGCCGGGGT TAACTCGGAG GAAGGTGGGG ATGACGTCAG ATCATCATGC CCCTTACGTC
CAGGGCTTCA CGCATGCTAC AATGGCCGGT ACAACGGGAT GCGACATGGT GACATGGAGC
GGATCCCTTA AAACCGGTCT CAGTTCGGAT CGTAGTCTGC AACTCGACTA CGTGAAGGCG
GAGTCGCTAG TAATCGCGAA TCAGCAACGT CGCGGTGAAT GCGTTCCCGG GCCTTGTACA
CACCGCCCGT CAAGTCATGA AAGTGGGCAG CACCCGAAGC CGGTGGCCTA ACCCTTTTGG
GATGGAGCCG TCTAAGGTGA GGCTCGTGAT TGGG
|
|---|
| Protein sequence | |
|---|
| |