| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1340 |
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| Symbol | |
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| ID | 8709267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1603275 |
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| End bp | 1603736 |
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| Gene Length | 462 bp |
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| Protein Length | 153 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646483425 |
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| Product | cytidine and deoxycytidylate deaminase zinc-binding region |
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| Protein accession | YP_003374523 |
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| Protein GI | 283783769 |
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| COG category | [F] Nucleotide transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0590] Cytosine/adenosine deaminases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.296989 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATGC GCGATGAGAT AGTATTTGCA ATGAATCAAG CCTTGAATTT GGCTCGAGAG
TCTGCTTCTG CAGGCGAAGT CCCAGTTGGA GCAGTTGTGC TTGATGGTAG CGGTAATATT
ATTGGCAAAG GCGCAAATAT GCGAGAGCAG AGCGCTGATC CTTTGGCTCA TGCTGAAGTG
CTTGCTATGA AAGATGCTGC TACCTCGCGT AAATCTTGGA ATCTATCTGA CTGTACTCTG
GTAGTAACTC TTGAACCTTG CCCTATGTGT GCTGGAGCTG TGCTGCAAAC GCGCCTTAAA
CGCGTGATTT TCGGGGCGTG GGATGCCAAA CTTGGTGCGT GTGGTTCTGT ATGGGATATT
TTGCGAGATC CTCATGTTGG CTCACGTCCG GAAGTCATTG GTTCAGTATG CGAACCTGAG
TGTGCTCAAC CCTTGCGAAC CTTTTTTGCG CATCAACGTT AG
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| Protein sequence | MNMRDEIVFA MNQALNLARE SASAGEVPVG AVVLDGSGNI IGKGANMREQ SADPLAHAEV
LAMKDAATSR KSWNLSDCTL VVTLEPCPMC AGAVLQTRLK RVIFGAWDAK LGACGSVWDI
LRDPHVGSRP EVIGSVCEPE CAQPLRTFFA HQR
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