| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1338 |
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| Symbol | |
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| ID | 8709440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1600164 |
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| End bp | 1601657 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646483423 |
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| Product | ABC transporter, ATP-binding protein |
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| Protein accession | YP_003374521 |
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| Protein GI | 283783767 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.375231 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGAAC TATCGCTAGT AGGAGTATCG AAAATATTCG GTAATTCTAC GGTAGTTGAC
AATGTGTCTG TAACAGTAAA ACCAGGTGAA GTGCATGTTC TCCTTGGTGA AAATGGTGCG
GGCAAGTCAA CAGTTATTAA GATGATGAGC GGCATTTATC AGCCAGATAA AGGTCATATT
GAGATCAATG GTGAAACAGC GCGAATTCCT AATGTGGATA CTGCTCGCAA ATTGGGCATT
GCTGTGATTC ACCAAGAGCT AAATTTGGTG CCAGAATTTT CTATTATGGA AAATTTGTTC
CTTGGTATGC TTCCTACGAA AGCTGGTTTT GTTAGTCGGG CGACGATGCG TGCTCGTGCG
GAATCTGCAT TGCAAGTTAT CGGTTTAGAT GAAGATGTCA ATAAGCCAAT GGGACAACTT
GGTGTAGCTC GTCAACAGAT GGTAGAAATA GCCAAAGCAC TTATGCAGCA TGCATCTATC
CTTATTCTTG ATGAACCAAC AGCTGCTCTA ACAAAACCAG AATGTGAACA GTTATTTAAC
ATTATGGAAG ATTTAAAATC CAAAAATGTT GGAATGGTGT TTATTTCTCA TCATTTAGAT
GAAATTGCGC GTATTGGTGA TGTTGTAACT GTACTTCGCG ATGGCAAATA CGTCGATACT
GTTGATGCGC AAGTTCCTGA GAAGGAACTT GTAAAACTCA TGGTAGGTCG TGATATTACA
AATCAATTCC CTCATGGCAA ACGTAGTCAA GGCAAAGAGC TGCTAAAAGT AGAAGGCTTA
ACGCGAAAAG GTACGTTAGA AAATGTATCC TTCAGCGTTC ATGCTGGCGA AGTTGTGGGT
CTTGCAGGTT TGGTAGGTGC TGGTCGTACC GAAGTTCTTC GTGCAATATT TGGTGCAGAT
AGTTATGATT CAGGTTCAAT AACTGTTGAT GGTAAATCTA TTGCAAAAGC GAATATTGCA
GGAAGCATCG CAGCTGGTCT TGGTTTAGTC CCAGAAGATC GTCGAGTACA AGGGTTGATT
CTTGAAGCAT CTGTTGCAGA AAATTTGGGA ATTTCTACAT TAGTTCCTAC AGCACATGCA
GGATTTGCGG ATTTGAAAGG GCAGCGTACT CGCGAGGAAG AAACTGCAAA AAAATTGCGT
ATTCGTATGG CAAACATTGA TCAACTCGCT GGTTCGCTAT CTGGCGGTAA TCAACAAAAA
ATCGTGTTCG GCAAATGGTC TATGGCGAAC GTGAAAGTGC TATTGCTGGA TGAGCCTACT
CGTGGTGTTG ATGTTGGTGC TCGTGTAGAA ATTTACGAGT TGATTAACAG TATCGTAGAA
AATGGAGGTG CTGTGCTGAT GGCATCCTCA GATTTGCCTG AAGTGCTTGG CATGTCAGAT
CGCGTATTGG TGATGTCGAA CGGCAGAATC AGCGGTGAAT TAGCTGCAAG CGAGGCTACG
CAGGAAAGTG TGATGGAACT TGCAGTGACT CACCTTAATA CATCTGGTAT TTGA
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| Protein sequence | MTELSLVGVS KIFGNSTVVD NVSVTVKPGE VHVLLGENGA GKSTVIKMMS GIYQPDKGHI
EINGETARIP NVDTARKLGI AVIHQELNLV PEFSIMENLF LGMLPTKAGF VSRATMRARA
ESALQVIGLD EDVNKPMGQL GVARQQMVEI AKALMQHASI LILDEPTAAL TKPECEQLFN
IMEDLKSKNV GMVFISHHLD EIARIGDVVT VLRDGKYVDT VDAQVPEKEL VKLMVGRDIT
NQFPHGKRSQ GKELLKVEGL TRKGTLENVS FSVHAGEVVG LAGLVGAGRT EVLRAIFGAD
SYDSGSITVD GKSIAKANIA GSIAAGLGLV PEDRRVQGLI LEASVAENLG ISTLVPTAHA
GFADLKGQRT REEETAKKLR IRMANIDQLA GSLSGGNQQK IVFGKWSMAN VKVLLLDEPT
RGVDVGARVE IYELINSIVE NGGAVLMASS DLPEVLGMSD RVLVMSNGRI SGELAASEAT
QESVMELAVT HLNTSGI
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