| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1337 |
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| Symbol | |
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| ID | 8709418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1598991 |
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| End bp | 1599992 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646483422 |
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| Product | amino acid or sugar ABC transport system, permease protein |
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| Protein accession | YP_003374520 |
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| Protein GI | 283783766 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.485159 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGCTA CGAGTAGTGC AAAATCTGAG CATTTGGGAT ACGGTGCAGT TGATAAAGGA
TTTTTGCCTG CAGCGAAAAA GTTTGCATCA CGCAATGGCG CTCTTATCGG CTTGATTATC
TTGTGTGCTG CGCTTTCGTG CGCCACGCCA GCATTTTTGA CAAGTGTGAA TATTCTCAAT
GTGGGTATTC AAGCTGCGAC AGTTGCTATT TTGGCATTCG GTCAAACCTT TGTTATCGTG
TCCGCTGGTA TTGATTTGTC AGTAGGTGCG GTGGCTGCAA TTTCTAGTAT GTTGGTTGCG
TATACAGGCG TTTCTATGGG TTTGCCACCA GTGTTAACTG TTGTTGTAGG CATAGTAACC
GGTGCGCTTT TTGGTCTTAT TTCAGGTGTT GCAAACGCTT TTCTTAAGTT ACCGTCGTTT
ATTGCTACAT TGGCAATGAT GTCTGTTGCG CGTGGACTTA CCCTTGTTGT TTCAGACGGT
CGTCCTATTT CCACTTCTGG CATGGTGAAT TTCTTTGGTG CCAAGATATT AGGTATTCCA
ATGCCAATTG TGATGATGAT TATCATGGGT GTTATTGCTG CAGTAATACT GAACTTCACC
ACTACTGGTC GTTCTATGTA TGCTGTTGGT GGAAATATGG AGGCTTCTCG CCTTTCTGGT
ATCAATATTC ATAAAACGCA AATTATGGTG TTTGTTTTTT CCGGTATTTT CGCTGCCATC
GCTGGTTTAG TTATTGCCGG TCGTTTACAT TCCGCTCAGC CTCAGGCTGC CGCTGGCTAT
GAAATGGATG CTATTGCTTC TGTTGTTATC GGTGGTGCTT CGCTTTCGGG CGGTAAAGGT
AAGATTTCTG GCACTTTCGT AGGAGCAATT TTGCTGGCTG TAATTCGTAA TGGCTTGAAT
ATTTTGAATG TTTCCTCCTT CTGGCAGCAA GTAGTTATTG GTTTGGTTAT TGCCTTTGCT
GTGAGCCTTG ACACTTTGCG CCGCAAGGAA GATACGCACT GA
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| Protein sequence | MAATSSAKSE HLGYGAVDKG FLPAAKKFAS RNGALIGLII LCAALSCATP AFLTSVNILN
VGIQAATVAI LAFGQTFVIV SAGIDLSVGA VAAISSMLVA YTGVSMGLPP VLTVVVGIVT
GALFGLISGV ANAFLKLPSF IATLAMMSVA RGLTLVVSDG RPISTSGMVN FFGAKILGIP
MPIVMMIIMG VIAAVILNFT TTGRSMYAVG GNMEASRLSG INIHKTQIMV FVFSGIFAAI
AGLVIAGRLH SAQPQAAAGY EMDAIASVVI GGASLSGGKG KISGTFVGAI LLAVIRNGLN
ILNVSSFWQQ VVIGLVIAFA VSLDTLRRKE DTH
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