| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1336 |
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| Symbol | |
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| ID | 8709024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1597789 |
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| End bp | 1598727 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646483421 |
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| Product | periplasmic binding protein and sugar binding domain of the LacI family protein |
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| Protein accession | YP_003374519 |
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| Protein GI | 283783765 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.454554 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTATC CAATTATGCG TCGAGGCGTA AAGATTGCTT GCGCGGTTGC AGCAGCATCT
GCACTTATTG TCAGCATGAG TGCATGTGGT AGTACTAATG GTGGCGATAA AGTCGCATTG
CTAGTTTCTA CTTTGAACAA TCCGTTCTTT GTGGATTTGC GTGATGGTGC CCAAGCTGAA
GCAGAGAAAC TTGGTGTTGA TTTGCAAGTT TCCGACGCTC AGAATGATTC TGCAAAGCAG
CAGGATCAAG CGCAGAATGC TCAATCACAA GGTGCAAAAG CTGTTATTAT TAACCCTGTA
GATTCTGATG CTGCTGGTCC TGCAGTTGCC CCGTTGCTAA GCGCGAACTT GCCTGTGATT
TCTGTTGACC GTTCTGTAAC TGGTGAAAAA GTTACTTCGC ATATTGCTTC CGATAACGTT
GCTGGTGGTG CTCAGGCTGC TGACACGCTA GCTAATAGTA TGGGCGAAAA GGGTGAAGTT
TTGATTTTGC AAGGTATTCC TGGAGCGGCT TCTACTCGCG ACCGTGGCAA AGGATTCAAA
GATCGTATTA AGAAATATTC AAATATTAAA GTTGTAGCAG AACAAACTGC TAACTTTGAC
CGTGCTGAAG CATTAAATGT GGCTACTAAT TTGTTGCAAT CGCACCCGAA TGCAACCGGC
ATTTACGCCG AAAATGACGA GATGGCATTA GGTGCCATTC AAGCATTAGG AGCTAAAGCT
GGTAAAGAAA TTAAAGTAGT CGGTTTCGAT GGCACTGTTG ACGGTATGAA AGCTATTAAG
GCCGGCGCAA TGGCTGGAAC AATTGCTCAG CAGCCAAAGG AACTTGGTCG TTCCGCCGTT
GCTGCTGCTG TAAAAGCTAT TAAAGGGCAA AGTGTTCCAA AGACTGAACC AATTACTGTG
AAAACAGTGA CAATAAAGAA TGTGGGTGAT TTTGAGTAA
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| Protein sequence | MNYPIMRRGV KIACAVAAAS ALIVSMSACG STNGGDKVAL LVSTLNNPFF VDLRDGAQAE
AEKLGVDLQV SDAQNDSAKQ QDQAQNAQSQ GAKAVIINPV DSDAAGPAVA PLLSANLPVI
SVDRSVTGEK VTSHIASDNV AGGAQAADTL ANSMGEKGEV LILQGIPGAA STRDRGKGFK
DRIKKYSNIK VVAEQTANFD RAEALNVATN LLQSHPNATG IYAENDEMAL GAIQALGAKA
GKEIKVVGFD GTVDGMKAIK AGAMAGTIAQ QPKELGRSAV AAAVKAIKGQ SVPKTEPITV
KTVTIKNVGD FE
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