Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1335 |
Symbol | |
ID | 8709279 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1597099 |
End bp | 1597494 |
Gene Length | 396 bp |
Protein Length | 131 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 646483420 |
Product | RbsD/FucU transport family protein |
Protein accession | YP_003374518 |
Protein GI | 283783764 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1869] ABC-type ribose transport system, auxiliary component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.548659 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAACTC ATGGTATTTT GAACGCACAA TTAGCAGCTG CTATTGCAAA ATTGAGGCAT AAGGATCAAT TTGTTGTTTC TGACTGTGGC CTGCCTGTCC CAGCGGGCGT AGAAGTTATT GATTTAGCTT TGGTTTTTGG AATACCGCGA TTTCCTGATG TGCTTGCATC AATAAAGGAT GATCTTGTTC TTGAGTCTGG TATTATGGCG GAAGAAGCTT GTGATGATGT TCCAGAAACA TGGATCAAGG ATTTGCTTGG TGTGCCATTG ACTTATGTGC CGCATGATGG CGAACGAGGG TTTAAGGCTC TTGTTTCGCA AGCTAAATTC GTGATTCGAA CGGGTGAGAC TACTCCGTAT TCTAACGTGT TGCTGCGTTG TGGCGTTCCA TTCTAA
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Protein sequence | MLTHGILNAQ LAAAIAKLRH KDQFVVSDCG LPVPAGVEVI DLALVFGIPR FPDVLASIKD DLVLESGIMA EEACDDVPET WIKDLLGVPL TYVPHDGERG FKALVSQAKF VIRTGETTPY SNVLLRCGVP F
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