Gene HMPREF0424_1335 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1335 
Symbol 
ID8709279 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp1597099 
End bp1597494 
Gene Length396 bp 
Protein Length131 aa 
Translation table11 
GC content44% 
IMG OID646483420 
ProductRbsD/FucU transport family protein 
Protein accessionYP_003374518 
Protein GI283783764 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1869] ABC-type ribose transport system, auxiliary component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.548659 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAACTC ATGGTATTTT GAACGCACAA TTAGCAGCTG CTATTGCAAA ATTGAGGCAT 
AAGGATCAAT TTGTTGTTTC TGACTGTGGC CTGCCTGTCC CAGCGGGCGT AGAAGTTATT
GATTTAGCTT TGGTTTTTGG AATACCGCGA TTTCCTGATG TGCTTGCATC AATAAAGGAT
GATCTTGTTC TTGAGTCTGG TATTATGGCG GAAGAAGCTT GTGATGATGT TCCAGAAACA
TGGATCAAGG ATTTGCTTGG TGTGCCATTG ACTTATGTGC CGCATGATGG CGAACGAGGG
TTTAAGGCTC TTGTTTCGCA AGCTAAATTC GTGATTCGAA CGGGTGAGAC TACTCCGTAT
TCTAACGTGT TGCTGCGTTG TGGCGTTCCA TTCTAA
 
Protein sequence
MLTHGILNAQ LAAAIAKLRH KDQFVVSDCG LPVPAGVEVI DLALVFGIPR FPDVLASIKD 
DLVLESGIMA EEACDDVPET WIKDLLGVPL TYVPHDGERG FKALVSQAKF VIRTGETTPY
SNVLLRCGVP F