| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1334 |
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| Symbol | |
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| ID | 8709858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1596006 |
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| End bp | 1597067 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646483419 |
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| Product | putative ribokinase |
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| Protein accession | YP_003374517 |
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| Protein GI | 283783763 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0524] Sugar kinases, ribokinase family |
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| TIGRFAM ID | [TIGR02152] ribokinase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.588315 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGTAGTT ATCATATGCT TGACTCGTTA GAGAGTTTAG AAAAGATTAA AGTCATTCAG
CCTGTTAACG TGGCTTTGCA ACATGAGACA TTGCCTGCGT TACGAAATAT GAAGATGCCT
ACTGTAGCGA TAGTTGGTTC TATGAATGCG GATTATACTA TTGTTGCTAA TCGTCTTCCT
ATGCCTGGTG AGACCATTAA AGGTAACGAA ATACGAATAC TGCCTGGAGG CAAGTCAGGT
AATCAGGCAG TATCTGCTGC AAAGCTTGGT GCGCACGTAT GTATGTTCGG TGCTGTAGGT
GATGATGCTA ATGCTGATTT TCTTACTGGT GCTTTGCGAG AATCTGGTGT TGATACGACG
TATGTACGTC ATGTACCCAA TTGCAACAGT GGCGCAACAG TGATTACAGT GGATGCGCAA
AGTGGCGAAA ATACTATTGT TTATGCGCCT GGGTCTAACT CGCAAGTTGA TATTGATTAT
ATTCAGTCGC CATCTGTGCA AGCTGCTATT ACTAATGCAA AAGTATTAGG GCTTTGCTTG
GAAAGTCCAT TAGAATCGGT TACGATGTGC GCTCGCTTAG CGCATGAACA TGGCGTAAAA
GTTTTGCTTA ATAATTCGCC TTTTTTGGAT ACATTACCGC AAGATCTTAT ACGATCTGCA
GATATCTTAC TGGTCAATGA GCATGAAATG GCACAGCTAT TGCATATTTC AGAACCAGAT
AGCGGTGATT GGGATTCATT TGATTGGAAG CATACGCTTC ATGCAATGCA TGAGTTTGGC
TTTAATGAGG CAATAGTAAC ACTTGGCTCA CGTGGGTCTA TGGTTTTGGA TTATGCTGAT
AATTCGGTGC ATCGAATTAT GGCTCAGCAT GTCAATGCCG TTGATACTAC GGGTTGTGGC
GATGCTTTTA TGGGTACTGT GCTTGCGTGT TTGTCTGTGG ATATGCGGTT GGTTGATGCA
GCGTCACTCG CTTCTTATGT AGCTGCATAT GCTGCTACTG GATTTGGCGC ACAAGCTTCT
TACGGTACAG TTGCTCAAAT TCGTCAATTT TTTCACTTGT AA
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| Protein sequence | MCSYHMLDSL ESLEKIKVIQ PVNVALQHET LPALRNMKMP TVAIVGSMNA DYTIVANRLP
MPGETIKGNE IRILPGGKSG NQAVSAAKLG AHVCMFGAVG DDANADFLTG ALRESGVDTT
YVRHVPNCNS GATVITVDAQ SGENTIVYAP GSNSQVDIDY IQSPSVQAAI TNAKVLGLCL
ESPLESVTMC ARLAHEHGVK VLLNNSPFLD TLPQDLIRSA DILLVNEHEM AQLLHISEPD
SGDWDSFDWK HTLHAMHEFG FNEAIVTLGS RGSMVLDYAD NSVHRIMAQH VNAVDTTGCG
DAFMGTVLAC LSVDMRLVDA ASLASYVAAY AATGFGAQAS YGTVAQIRQF FHL
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