| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1313 |
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| Symbol | |
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| ID | 8709777 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1569008 |
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| End bp | 1570387 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646483400 |
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| Product | alpha amylase, catalytic domain protein |
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| Protein accession | YP_003374501 |
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| Protein GI | 283783747 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTATAC CACAGTGGTT GCCTGATGCA AGATTTTATC AGATTTTCCC TGATCGTTTC
CATCGTTGTG AAGGCTACGG TATGCTAACT GAAGGTCATG TGCCGCTTGA TCCATGGGAT
GCTGAGCCTA CGCGTGAGAA TTTCTTAGGT GGTAATATTG CTGGAATTAC AGAAAAACTT
GATTATATTC ATGATTTAGG TTGCAACGCG CTCTATTTGA ATCCAATTTT TTCTGCTGCA
ACAAATCATC GTTATGATGC AAACGATTAT TTTAAAATCG ATCCACTTTT AGGAACTCTT
GAAGATTTCC ATACATTAGT AGATGAAGCG CATAAGCGGA ATATACGTAT AGTACTAGAT
GCAGTTTTAA ATCATTGTGG TAAAACTCAT TGGATGTTTC AAGATGTTGT TAAAAATGAA
GAGAATTCAG AATATGTGAA TTATTTTTCA GTGAAAAACT TCCCAGTTAA GTCATTGCCT
GTGCCTAATT ATAAAACCTG TTCTGGTTGT GAATATCTAC CGAAGTGGAA TGTGTTTAAT
CCAAAGGTGC GTGAGCATCA TTTTAATGTT GCAAGATATT GGATCGATCA AGGTATCGAT
GGTTATCGTC TTGATGTTCC ATATTTTATT TATCCAGAAT TTTGGCAGGA CTTTAGGCAA
GTTGTTAAAG CAAAAAATTC GGAATTATGT TTGATAGCTG AAGAGTGGAG AGACCCTGCT
CAATGGTTGC AAGGAGACAC TACTGATAGC ACAATGAATT ATACTCTGCG TGATTTAGTT
TTAGGTTTTA CCGCGACAAA GCGATTCAAT GCATACGATT TTGTTAACGG TATTAACCGT
TTGCAGGAGC GCATACCGTA TGGATATCAC CATGGAATGA TGAATTTGTT GGGTAGTCAC
GATACTGAGC GTGTTTTAAC TGCGCATCAA AATAATACTG AGGATTGCAT AACCGCGTAC
TATTGCATGT TTGCCTGCGA AGGTGCTCCA ATGATTTATT ACGGTGATGA GCTTGGTATG
GTTGGCGATA ATGATCCAGG GTGCCGTTCT GGTATGCAGT GGGATAGTCT TGATGCAAAT
GCTGAAATAT TCCGTACAAT TGTTCAATTA AATGCATTGC GGCGTGATCA TATTGCGTTG
CGAAGAGGCA CGCAAAGTTG TTACGCTGTT GACGAAGATA CTGTCATTAT TTCTCGAGAG
CATAAGGAAG AATCTCTTTT GATGATTATT TCACGTAATA ATTTGGTAGA ATATAATTCA
TCGAAGCTAC CTCAACAATT GCAAAATCAT AATTGGCGAA TTATAAATGG TGTAACTGTT
GGAAATAGTT GGCGCCCCAA TAAAGATAAT TCTATGATTG TATTGCAAGC TCAACAGTAA
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| Protein sequence | MSIPQWLPDA RFYQIFPDRF HRCEGYGMLT EGHVPLDPWD AEPTRENFLG GNIAGITEKL
DYIHDLGCNA LYLNPIFSAA TNHRYDANDY FKIDPLLGTL EDFHTLVDEA HKRNIRIVLD
AVLNHCGKTH WMFQDVVKNE ENSEYVNYFS VKNFPVKSLP VPNYKTCSGC EYLPKWNVFN
PKVREHHFNV ARYWIDQGID GYRLDVPYFI YPEFWQDFRQ VVKAKNSELC LIAEEWRDPA
QWLQGDTTDS TMNYTLRDLV LGFTATKRFN AYDFVNGINR LQERIPYGYH HGMMNLLGSH
DTERVLTAHQ NNTEDCITAY YCMFACEGAP MIYYGDELGM VGDNDPGCRS GMQWDSLDAN
AEIFRTIVQL NALRRDHIAL RRGTQSCYAV DEDTVIISRE HKEESLLMII SRNNLVEYNS
SKLPQQLQNH NWRIINGVTV GNSWRPNKDN SMIVLQAQQ
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