Gene HMPREF0424_1312 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1312 
Symbol 
ID8709116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1567917 
End bp1568978 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content41% 
IMG OID646483399 
Productperiplasmic binding protein and sugar binding domain of the LacI family protein 
Protein accessionYP_003374500 
Protein GI283783746 
COG category[K] Transcription 
COG ID[COG1609] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGAAAGA AAATTACAAT GCAGGATATT GCTGATGCAG CGCGTGTCTC TAAATCTGCT 
GTCTCCTTTG CGTATAATAC TCCTGATCGC TTATCATCAG AAACTGTAGA ACACATATTT 
TCAGTTGCAA AGGAACTAGG ATATGTGCGT AATCCTGTTG CTTATATGCT GCGAACTCAA 
AAGACAAATA GTTTGGGATT GTTACTACCA CAGCAATTAG GGCGAGTGCT AGAAAATCCA 
TACTATTCGG AATTTATTCA AGGTATTGGG CAAATCTGTG AGCGAGAGGG ACTGACGCTT 
CTTTTAGTGC CTCCACTTCG TAATTCTATG TTAAAAGCAA TTCCTTATGC TGCAGTTGAC 
GGTTTTATAG TAACTGGTTT AGAAGAAGAT CGTGGTGAAG TTGAAGCTCT TATGCAGCAA 
GGAAAGCCAT TTGTTATTGT TGACAGTGAG GTGCATAGTC AGGCTCCAAG TATCAATATT 
GATGAGACGC GCGCTATGAA GGAATTAACT GAGCATCTTA TTTCATTGGG CCATCGCAAT 
TTTGTGGTGA TTTCTCCAGA ATCAGGCAAT GATGATGGGT ATCTTTCTTG GCATGGAACA 
ATTCGTCGCC GTATTGATGG TGTGATTTCT GCTTTAGAAG AGAATGGAAT AGCCCCACTG 
GTCGATAAGA AAAATGTTAT TGAAGTGCCA TGCACTCGTG CTGGAGGAAA AGAAGCTTTT 
GCACAAATAA CTAAACAAAA TAATTCTGCA TTCCCAACTG CGTTCATCTG CTTTAGTGAT 
GTTATTGCGT TTGGAGTAAT GGATGCTGCT AGACAGTTTG GTTTGCAAAT CCCACGTGAT 
ATTTCTGTTA CAGGTTTTGA TGATCTAGAT GAGTCTGCAT GTAGTAATCC ACCGTTGACA 
ACAGTTAAAC AGCCTGTTAC AACTAAAGGA CGTTTAGCTG CTGAATATAT AGTAGAGACT 
TTGAATGCTG GGTATGAACG AGCATCATCC CGTCACGTAT GTCTACCTAT TACTGTGCTG 
CTGCGTGAGT CAATTGGCCC AGCAGCATCT ATAAGAGAAT AG
 
Protein sequence
MGKKITMQDI ADAARVSKSA VSFAYNTPDR LSSETVEHIF SVAKELGYVR NPVAYMLRTQ 
KTNSLGLLLP QQLGRVLENP YYSEFIQGIG QICEREGLTL LLVPPLRNSM LKAIPYAAVD 
GFIVTGLEED RGEVEALMQQ GKPFVIVDSE VHSQAPSINI DETRAMKELT EHLISLGHRN 
FVVISPESGN DDGYLSWHGT IRRRIDGVIS ALEENGIAPL VDKKNVIEVP CTRAGGKEAF 
AQITKQNNSA FPTAFICFSD VIAFGVMDAA RQFGLQIPRD ISVTGFDDLD ESACSNPPLT 
TVKQPVTTKG RLAAEYIVET LNAGYERASS RHVCLPITVL LRESIGPAAS IRE