| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1311 |
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| Symbol | |
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| ID | 8709798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1566274 |
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| End bp | 1567800 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646483398 |
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| Product | aminotransferase AlaT |
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| Protein accession | YP_003374499 |
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| Protein GI | 283783745 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACAGA ATTTTGCTGA TGAGCTTAAA AAAGCTATGA AGCGTAAGGG GTACAAGCAG
ATTGACGTAA TCGAGCTTGC AGCAAAAAAC GGTCATAAAC TTGGTAAAAG CCAGTTAAGC
CAGTATTTAA GCGGCAAAAC CGAGCCTCGC AAAGACGTAC GTAACATGCT AGCTGAAATT
CTTGGAATCA GCAGCGACGG AATCAAAGGC GGTCATTCTT GTGCAAAAAT CGAGCAAAAC
TGCCAGTCTG CAGAAGAACC ACAATTAAAT CAGCCACAGC TTACAGAAGC TGAACTTTCC
CAAACACTCA AACATAGAAC CTTCAACAAA TCAACCAAAC TCGAGCACGT GCTTTATGAC
GTTCGCGGCC CAGTTGTTGA AGAAGCAAAC CGCATGGAAG CGAACGGAAC GCATATTCTA
AAGCTCAACA TTGGAAATCC TGCGCCTTTC GGATTCCGCG CTCCAGACGA AGTGATTTAC
GACATGCAAC AGCAGCTTAT TGACTGCGAA GGCTACTCGG ATAGTCGTGG ACTTTTCTCC
GCTCGCAAGG CGATTATGCA ATACGATCAG CTTAAGGGCA TTCCAGGCGT GCAAATGGAA
GATATTTACA CTGGAAACGG AGTTTCCGAG CTGATTAATC TTTCTATGCA AGCGCTGCTT
GATTGCGGCG ACGAGATTCT TATCCCAAGC CCAGACTATC CGTTGTGGAC TGCGTGCGCT
AGCCTGGCTG GAGGTACTCC TGTGCACTAC ATGTGTGACG AAAAGTCGCA TTGGTACCCA
GATATTGCCG ACATTCGCTC TAAAATCACG CCTCGCACTA AAGCAATCGT GATTATTAAC
CCGAATAATC CTACGGGTGT GCTGTATAGT CGCGAAGTTT TGGAAGAGAT TGTTAAGATT
GCGCGCGAGT TTAATTTGAT TATTTTTGCG GACGAGATTT ACGACCGTCT TGTTATGGAT
GGCAAGAAGC ATATTTCGAT TGCTTCTCTT GCTCCAGACG TATTCTGCGT AACTTTCAGC
GGACTTTCTA AGTCGCATAT GATTGCTGGC TTCCGTATTG GTTGGATGAG TCTTTCGGGA
GATAAATCCA AGGCTCGCGA CTACATTATG GGTCTTAATA TGCTGTCTAA TATGCGCTTG
TGCTCGAACG TTCCTGCGCA GTCAATTATT CAGACTGCTT TGGGCGGATA CCAGAGCGTT
GAAAAGTATT TGGAACCAGG CGGACGCGTG TATGAGCAGC GCGAGTATTG CTATAACGCG
CTTCAAGAGA TGGATGGCGT AAGCGTTGAG CGACCAGACG CTGCTTTCTA CATGTTTGTA
AAGCTCGATC CAAGTCGATA CAACATTCAC GACGACGAAC AGTTTGCGCT TGATTTGCTA
CGCGATCAGA AGTTGCTGAT TGTGCACGGC AAAGGCTTTA ATTGGCAGAC TCCAGGCTAC
TTCCGCGTAG TCTACTTGCC GCGCTTGCAA ACGCTTCGTG ACGCAATGGG CAAACTCGCT
AACTTCCTCT CCTACTATCG CCAGTAG
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| Protein sequence | MAQNFADELK KAMKRKGYKQ IDVIELAAKN GHKLGKSQLS QYLSGKTEPR KDVRNMLAEI
LGISSDGIKG GHSCAKIEQN CQSAEEPQLN QPQLTEAELS QTLKHRTFNK STKLEHVLYD
VRGPVVEEAN RMEANGTHIL KLNIGNPAPF GFRAPDEVIY DMQQQLIDCE GYSDSRGLFS
ARKAIMQYDQ LKGIPGVQME DIYTGNGVSE LINLSMQALL DCGDEILIPS PDYPLWTACA
SLAGGTPVHY MCDEKSHWYP DIADIRSKIT PRTKAIVIIN PNNPTGVLYS REVLEEIVKI
AREFNLIIFA DEIYDRLVMD GKKHISIASL APDVFCVTFS GLSKSHMIAG FRIGWMSLSG
DKSKARDYIM GLNMLSNMRL CSNVPAQSII QTALGGYQSV EKYLEPGGRV YEQREYCYNA
LQEMDGVSVE RPDAAFYMFV KLDPSRYNIH DDEQFALDLL RDQKLLIVHG KGFNWQTPGY
FRVVYLPRLQ TLRDAMGKLA NFLSYYRQ
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