| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1306 |
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| Symbol | |
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| ID | 8709046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1561922 |
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| End bp | 1563337 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483393 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_003374494 |
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| Protein GI | 283783740 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAGTC GTTCGGTTAA GTCGATTATT GCGCTAGTGG TTTGCGCTGT TTTGGCGGCT
TGTGCGTTTA CTGCTTTTGG TTTTTCTCAG TCTTTTGGCG CAAATGCCGA TAGGTCTGCT
AATGGGAAGG TTATTTTCTT CAACTTGAAG CCTGAAGCTA CTGCTATGTG GGAAGAAGTT
GCTAAAGAAT ACACAAAACA GACTGGTGTT ACAGTAAGCA TAGTTACGCC AACTGGCGGT
CAGTATGAAA AGAGACTTAA AACCGAAGTT GAGAAATATA AAGATAATCC AGATAGCATG
CCTACGTTAT TCCAGATTAA CGGTCCTGTT GGCTACGCTA ACTGGAAGGA TTACACTGCT
GATTTAACTA ATTCCCCTCT TTATACGCAA CTTAGCAATA AAAATCTTGC TTTTATGGAT
AACGGTAAGC CGGTTGCTGT GCCATATGTT ACTGAAAATT ACGGCTTGAT TTACAACAAG
GCTTTGCTTG CTAGGTATGC GGATCTTAAA GATGCAAAGT TGCAGCCAGA AGAAAACGGC
AAATCTTTTG AAGATCAAAT AACTAATTTC GCTGCGTTGA AGGCTGTTGC AGACGATTTG
CAAAAGCGCA AGGATGAGCT TGGTATTGAC GGTGCTTTTG CGTCCGCAGG TTTTGATTTA
AGCTCCGACT GGCGTTTTAA GACGCATCTT GCAAATATGC CTTTGTATTA TCAATTCGTT
AAGAATAACG TTAATGGTCA GCCTCAGTCA ATTAATTACG ACTATGTTGA TAATTTCAGG
AAGATTTTTG ACCTTTATAT TTCTGATTCC ACAACTCCTG TAAGCCAGTT AAGTACTAAA
ACTGGCGAGG ATGCTGTTTA TGAGTTTGCT CTTGGTAAAG CTGTGTTCTA CCAGAATGGT
ACTTGGGCTT GGGGTGATTT TTCAAAAGCT GGCATAAAGC CTGACGATGT TGGCATGCTA
CCAATTTATA TTGGTGCTAA GGGCGAAGAG AAACAAGGCA TGGCTACCGG TTCGGAAAAT
TATTGGTGCA TTAATAAAAA GGCTTCAAGG CGGAATCAGG AAGCAACTAA TGCCTTCCTT
AATTGGTTAC TTACTACAAA TTATGGTAAG GATGCTTTGG CTAATAAAAT GGGCTTTGCT
ACTCCTTTCA AAGGTTTCCC TAAAGCAGAA AATCCTCTAG TTCAGGCTGC TGTTGATTAC
ACTGCTAAGC CTGGCAAATT GCCTGTTAAG TGGGTGTTTG TTACTATGCC ATCTAACGGT
TGGAAAGACG ATGTTGGCTC TGATCTGCTT ACATATGCTC AAGCAACAAA AGACGGTATG
ACTTCTATTG GCGCTAATAA GGCATGGGCT ACTCTTAAAT CCGCGTTTGT TGACGGCTGG
GCTAAGGAAT ATAAGATTGC TCATGGGCAG AGTTAG
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| Protein sequence | MMSRSVKSII ALVVCAVLAA CAFTAFGFSQ SFGANADRSA NGKVIFFNLK PEATAMWEEV
AKEYTKQTGV TVSIVTPTGG QYEKRLKTEV EKYKDNPDSM PTLFQINGPV GYANWKDYTA
DLTNSPLYTQ LSNKNLAFMD NGKPVAVPYV TENYGLIYNK ALLARYADLK DAKLQPEENG
KSFEDQITNF AALKAVADDL QKRKDELGID GAFASAGFDL SSDWRFKTHL ANMPLYYQFV
KNNVNGQPQS INYDYVDNFR KIFDLYISDS TTPVSQLSTK TGEDAVYEFA LGKAVFYQNG
TWAWGDFSKA GIKPDDVGML PIYIGAKGEE KQGMATGSEN YWCINKKASR RNQEATNAFL
NWLLTTNYGK DALANKMGFA TPFKGFPKAE NPLVQAAVDY TAKPGKLPVK WVFVTMPSNG
WKDDVGSDLL TYAQATKDGM TSIGANKAWA TLKSAFVDGW AKEYKIAHGQ S
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