| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1302 |
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| Symbol | |
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| ID | 8709552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1557162 |
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| End bp | 1557995 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646483389 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003374490 |
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| Protein GI | 283783736 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0395] ABC-type sugar transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAGA AAACAAAGCA TCCTGCGTTA TGGACTGTGC TGTTCACTCT TATAAGCTTG
TTATGGATTT TCCCTATAGC TTTAGTGGTA CTGAATTCTT TCAAGTCTAA GGTTGATATT
GCAAGCAATC CTTTTACTTT TAGTTCAAAA TCGTTTGTTG GAATGTCTAA CTACGTATTA
GGTTCAAATC GTACTGATTT TCCGATGAGT TTCCTCTGGA CCATTGTTGT AACTGTTGGT
TCTGTGATTC TCATTCTTCT GTGCACGTCA ATGTGTGCAT GGTGGATTGT TCGTGTGAAC
AATTGGGCAG CAAAACTTCT ATACGTTTTG TTCCTGTTTA ACATGATTGT GCCATTCCAG
ATGGTTATGT ACACCCTTGC TTACATTACG AACACTTTGA AGTTGAATAC TCCATGGGGA
TTGTGGATTA TTTACTTAGG CTTTGGTGCA GGACTTGCAG TGTTTATTTT CACTGGTGTG
ATTAAGGGTA TTCCGCAAGA ACTCGAAGAG TCTGCAATGA TTGATGGTGC TTCTGTGCCA
CGTATATTCT TCCAGATTAT TGTGCCGATT ATGCGACCTG CTATTATTTC GGTTTCAATC
TTGCAGGCAA TGTGGATTTG GAATGACTTC CTGCTTCCAT TCTTGACGCT CGATCTCAAC
AAGTATAAGA CTATTTCTAT AGCTGTTCAG TATTTGAAGG GCGGCTATGG ATCTGTCGAG
ATGGGCGCAA TGATGGGCTG CTTGGTTATG GCAATTGTTC CAATCATAAT CTTCTACCTC
ATCTGCCAGA AGTACATTAT TAAAGGTGTT ATGTCTGGTG CAGTAAAGGG ATAA
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| Protein sequence | MNEKTKHPAL WTVLFTLISL LWIFPIALVV LNSFKSKVDI ASNPFTFSSK SFVGMSNYVL
GSNRTDFPMS FLWTIVVTVG SVILILLCTS MCAWWIVRVN NWAAKLLYVL FLFNMIVPFQ
MVMYTLAYIT NTLKLNTPWG LWIIYLGFGA GLAVFIFTGV IKGIPQELEE SAMIDGASVP
RIFFQIIVPI MRPAIISVSI LQAMWIWNDF LLPFLTLDLN KYKTISIAVQ YLKGGYGSVE
MGAMMGCLVM AIVPIIIFYL ICQKYIIKGV MSGAVKG
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