Gene HMPREF0424_1298 details

Gene Information

• Locus tag: HMPREF0424_1298
• Symbol: pulA_2
• ID: 8709264
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 1551362
• End bp: 1553371
• Gene Length: 2010 bp
• Protein Length: 669 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 646483385
• Product: pullulanase, type I
• Protein accession: YP_003374486
• Protein GI: 283783732
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases
• TIGRFAM ID: [TIGR02104] pullulanase, type I

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 32
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACGACTC CATCTTCGGC AACATGGCCT GTATACGAAG GACCTCTTGG ATTTACTTTA 
AACGCTAAAT CTACAACATT TACTGTATGG GCACCAACTG CACAGAATGT GACGTTAAGA 
CTTTTTGAAA CCGGAAACAA CAGTGAGCCA ATTCAAACAC ACGAATTGAA ACCGTTGCAT 
GACGGAGCTT GGCGGATTAA TTTCCGTAAG CGTTTAGACG GCATATACTA CGATTATCTT 
GTTACTTTCC AAGATGGCAC AGTAAATCGA ACTAGTGACC CTTGGGGTGT AGCAAGCGGT 
GTAAATGGTG AGCGCAGCCT TGTCATAGAC GATGAGCGAG TGTCTCCTGC CAATTGGCAT 
AAAGATAAGT CTCCTAAGTT TGTGCGTCAT GCAATGGTTG TGTGGGAAAC GCATGTTGCA 
GATTTCAGCA GCAATCCTAA TGGCGGCTTT AAGCCAGAGC ATAGAGGCCA ATATCTCGCT 
TTTACTGATG AACATACATC TTTGCAAAAT CCAGATTCTT CTGAATGCAA CTTCCCTACT 
GGCTTGGATT ATTTAAAGCA GCTTGGCATT ACTCATGTGC AACTCGAACC TATTTACGAT 
TTTGCAACAG TTGACGAATC CGCAATCGAC AATGCGCGCA AAAACGGTGC TTCAGCAGAA 
GAATTAGATT CTCTATACAA CTGGGGTTAT GATCCTCACG CTTACAACGT TCCTGAAGGT 
GCTTATTCTA GCAATCCTTA CGACGGCACT GCGCGAATTC GCGAATGCAA AGCAATGATT 
GCGGCATTAC ATGCTAATGG CCAACGCGTA ATTATGGATG TTGTTTATAA TCACATGTAC 
AAGTCTGCAG AAAACGCTTT CGAATGCATG GCTCCTGGGT ATTTCTGCAG GCGAGACTCT 
GACGGATCTT TTGCTAACGG CTCTGGCTGT GGAAATGAAA TGGCTTCTGA ACATCCTATG 
TTCCGCAGGT TTATTATTGA ATCTTTGCTG CATTGGGCAC GCTGCTATCA CATTGATGGC 
TTCCGTTTTG ATCTTATGGG ATTGACTGAT ACTGAAACCT TAAATCAGGC ACGAGCTGCA 
TTAGATGAGC TTCCTGGCGG TAAAGATATT GTTATGTATG GAGAACCGTG GAGTGCTTCG 
GACCCTGCTG TTGATGAAAA AGTTCCGATG GGAGATAAAG ACGGCAGAAG CACTCTTAAC 
GAGCGCATAG GCTGGTTTAG TGACGAGTCT CGCGATTCCC TCAAAGGCAA CGTCATGAAC 
CATCTCGACC GCGGGTATGT AAATGGCAAT GAGCTCTGGT GCTCAGATGC GGCTCGCCAA 
ACTCTTAATG CATGGCGTGA TACTCCTTCT GCAGGTAAAG AAGTTGGACA GATTGTTCAA 
TATACTTCTG CTCACGACGA TTTGACTTTC TGGGATAAGC TTTGTATCTC TATGCGCGAG 
AATGCTAGCG ATTTTGAGTT TGACGCTCAA GATGCACAAC AAGTTGCGGA TATTTTGAAC 
GCTAATATGT TTGCAGCTGG AATTGTTTTG TGCTCTGCAG GCACGCCGTT TATGCTAAGC 
GGAGAAGAGT TTGGACGTAC TAAGCACGGT TGCGATAATT CTTATAATCG CGGTGTACTA 
ATGAACCAGC TTGACTGGGC GCGCGCTGAA CGTTTCAATC CGCTTGTTCA ATGGTATCGT 
GCACTTATAA AGCTTCGCGC TGAATATAGC TCATTGTATG ATGGCAAACG CAAACAACTT 
GAAACGTCTA ACCATACTGT TTTGGCTACG CGCATTGGCA ATAATTTAAT TGTTTGCGCA 
AATCCTATGT ATCATGAAGA TGCAACTATT CAGCTACCTG CTATTCATAG CGCAAAGGCT 
CAAGAGTGGC ATTGCGTACT TAATTCAAGT GATTATTTTG CTAAGTGGAC TGGAAAACAA 
CCTGACACCG CGGTAAATAT TACAACTGAA AAAAGCGCTG CTACCCTACA CTTGCCTATC 
AGAACTTTTG TTGTGCTTAG CAACAAGTAA 

 

Protein sequence

MTTPSSATWP VYEGPLGFTL NAKSTTFTVW APTAQNVTLR LFETGNNSEP IQTHELKPLH 
DGAWRINFRK RLDGIYYDYL VTFQDGTVNR TSDPWGVASG VNGERSLVID DERVSPANWH 
KDKSPKFVRH AMVVWETHVA DFSSNPNGGF KPEHRGQYLA FTDEHTSLQN PDSSECNFPT 
GLDYLKQLGI THVQLEPIYD FATVDESAID NARKNGASAE ELDSLYNWGY DPHAYNVPEG 
AYSSNPYDGT ARIRECKAMI AALHANGQRV IMDVVYNHMY KSAENAFECM APGYFCRRDS 
DGSFANGSGC GNEMASEHPM FRRFIIESLL HWARCYHIDG FRFDLMGLTD TETLNQARAA 
LDELPGGKDI VMYGEPWSAS DPAVDEKVPM GDKDGRSTLN ERIGWFSDES RDSLKGNVMN 
HLDRGYVNGN ELWCSDAARQ TLNAWRDTPS AGKEVGQIVQ YTSAHDDLTF WDKLCISMRE 
NASDFEFDAQ DAQQVADILN ANMFAAGIVL CSAGTPFMLS GEEFGRTKHG CDNSYNRGVL 
MNQLDWARAE RFNPLVQWYR ALIKLRAEYS SLYDGKRKQL ETSNHTVLAT RIGNNLIVCA 
NPMYHEDATI QLPAIHSAKA QEWHCVLNSS DYFAKWTGKQ PDTAVNITTE KSAATLHLPI 
RTFVVLSNK