| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1294 |
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| Symbol | |
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| ID | 8708962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1545376 |
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| End bp | 1547076 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646483381 |
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| Product | alpha amylase, catalytic domain protein |
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| Protein accession | YP_003374482 |
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| Protein GI | 283783728 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTAT ACGATCATGC TCAGTGGCTT AAAGACGCGG TTTTTTACGA AATCTATCCG
CAAAGTTTTT GTGATTCCAA TGGCGATGGC ATAGGCGATA TTCAAGGAAT TATCGAAAAG
TTAGACTATG TAAAATCGCT TGGTTGCAAC GCAATTTGGC TTAATCCTTG CTATGACTCG
CCTTTTAAAG ATGCGGGCTA TGACGTGCGC GACTACAAAA AAGTAGCTGC GCGTTACGGA
ACGAACGAAG ATTTAAAGCA GCTTTTTAGT GAAGCTCACA ATCAAGGAAT CCGCATATTG
CTTGATTTAG TGCCAGGTCA CACTAGTGAA GAACATGAAT GGTTCCGCGA AAGTTCGAAA
GCTGAAGAAA ACGAGTTTAG CAAGCGATAT ATTTGGACAG ACAGTGCGTT TAGCGGCTAT
TCTATGCCGT TTATTGGCGG TGAAACTGAG CGTGACGCCA CTTATATTCT AAACTTCTTC
AAATGTCAGC CTGCATTAAA CTACGGTTTT GCGCATAGGG ATCGAGCTTG GCAATCCGCT
CCAGATTCCA AAGAAGCGGC AAAAACTCGC GCTGCAATAG TTGATATTAT GCGATTTTGG
CTTTCGCTTG GTGCGGATGG CTTCCGAGTC GATATGGCTG ATTCGCTTGT AAAAAACGAT
GACAATAATG GCGAAGGAAG CCTTGGAAAA GACAATACAA TTCGCGCATG GCAGGAAATG
CTTGGCACTG TAAAAGAAGA GTATCCGCAG GCTGCTTTTG TGTCCGAATG GGGCAGACCG
CGTCAGGCTC TTACTGCAGG ATTCGACATG GACTTCTATT TGAATTGGCG CTGGGATGGC
AATCCTAATG GTTATGCGCG TTTACTTCGT GACGTTGATA ACGCTTTAGA TAACAATTCT
GAGCGCGATC ACAGCTACTT TAATGCGCAC GGTGGCGGAA GCATTTGCCC ATTCTTGGAC
GACTACTGCC CGCAGTATGA ATCAACCTGT AATCAAGGCT ACTTTAGTTT CATCACATGC
AATCACGATA CGCCGCGTCT TGCTCCGCGT CTTGACGATC GTGAGCGTCG CGTGGCTTTC
GGCATGATAC TCACTATGCC AGGCGTGCCA TTCGTGTACT ATGGCGACGA AATTGGCATG
AAATATCGCG ATATCCCAAC AAAAGAAGGC GGCTACGCTC GTACGGGCAC TCGTACGCCA
ATGCAATGGG ACGATGCAAA GAATTTTGGC TTCTCAATGG CTGCAAAATC TAAATTATAC
TTGCCTGTTG AAGCGCGAGC AGACGGAAGA ACTTGCGCAA ATTCTCGAAA ACAAGCAGTG
GGAAGTGGTG AAATTCCAAC TGTTTCTGCG CAAATTAATT GCGAAGATTC CTTCCTTTCG
TGGGTGCGCT CGCTTATTGC GCTTCGCCAT AGTCGCAAAT CTTTGCAAGC TGACGCGTCT
TGGAGAGTTT TGTATGCTCC GGTTGACGGC CGCGGCTTTG CTTACGAGCG TTGCGCAAAA
GGTGGCGCAG GAGAATCAGC TGTGGAACGA AGCATTGTGG TTATGAACCC AGGTGTAAAT
AGTGAAACAG TTTCATTAGA AGCATTAGCG AATCTTACGC AAGAATCTGC TTACAATCCA
TTACTGAAAA TTGGAGAAAT ATCAGTTGAT GGTGATTGCT TAACACTCGG CGCTCAAAGT
TTTGCAGTGT TTGGAATGTA A
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| Protein sequence | MALYDHAQWL KDAVFYEIYP QSFCDSNGDG IGDIQGIIEK LDYVKSLGCN AIWLNPCYDS
PFKDAGYDVR DYKKVAARYG TNEDLKQLFS EAHNQGIRIL LDLVPGHTSE EHEWFRESSK
AEENEFSKRY IWTDSAFSGY SMPFIGGETE RDATYILNFF KCQPALNYGF AHRDRAWQSA
PDSKEAAKTR AAIVDIMRFW LSLGADGFRV DMADSLVKND DNNGEGSLGK DNTIRAWQEM
LGTVKEEYPQ AAFVSEWGRP RQALTAGFDM DFYLNWRWDG NPNGYARLLR DVDNALDNNS
ERDHSYFNAH GGGSICPFLD DYCPQYESTC NQGYFSFITC NHDTPRLAPR LDDRERRVAF
GMILTMPGVP FVYYGDEIGM KYRDIPTKEG GYARTGTRTP MQWDDAKNFG FSMAAKSKLY
LPVEARADGR TCANSRKQAV GSGEIPTVSA QINCEDSFLS WVRSLIALRH SRKSLQADAS
WRVLYAPVDG RGFAYERCAK GGAGESAVER SIVVMNPGVN SETVSLEALA NLTQESAYNP
LLKIGEISVD GDCLTLGAQS FAVFGM
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