| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1291 |
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| Symbol | |
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| ID | 8709886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1541622 |
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| End bp | 1543007 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646483378 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_003374479 |
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| Protein GI | 283783725 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATCA GAAAAATGTT TATTTCATGT GTCGCCGTTT TAGGCATGCT TGCTAGTGTT
AGCGCATGCG GCAGCAATTC TGCCGGTGTC ACCGACACGA AAAAAGACAA AGGTTTGCCG
GTAATGGGCG AGGCATTGAA ATATGATCCC AACCACCTTG TTAATCAAGG CAAGCCAATT
GCTTTGGAAT ATTGGAGCTG GGGAGACAGT AGTACCGACC CAATCTACGA TATGATCAAG
CAGTACACGA AAATCTACCC TAACGTAACG TTCAAAACAA AGAACGTTGC TTGGGACGAT
TATTGGACGA AACTGCCGTT AGTACTCAAA GGTAAAAGCG GTCCGGCTCT GTTCAATATT
CACAATTCCA AGGATGAGCT TATACGCCCA TACTCTGCCG ACTACAACGT TGACAAGGCA
GCAATGGAAG CTGACTACAG CTCCTCTGTT GCACACGAAG ATGCCAACGG AAAAGTAAAG
TATATTGACT CGGTTATCAA TACCGGCAAT ATTTACTACA ATAAAAAGCT TTGGAAAGAA
GCCGGTTTAA CAGAAGCAGA TATTCCTACG ACTTGGGAGG AGTTACGCGA GGTGGCAAAG
AAACTCACCA AGTGGAACGG TTCTAAGATG GTACAAGCCG GTTTCAACGT TAATGGTGAC
GCATACGCTG CAATCAACCA AGGCTTGAAC TATCAACGTG GCGAACTTGC GTTCGATAAA
AGTGGCAAAA AGCCTAACTT TGACAACAAA ATTACGCGCG AAAACATGCA ATTCCTAAAG
AATTTGTACG ACAAAGACAA AGTTATTGCA ACAGACTTCG GTACTGATTA CACGCAAAGT
TTTGGCAACG GACAATCCGG AATGGTATAC GCTTGGGGCT GGCTTGAAGG CCTACTGAAA
GAAAAATATC CGAATGTAGA ATACGGTATT TTCCCAACTC CAACATTCAC GAAAGAAACG
CCATTCGCTT ATGATCGCTA CAACGGCGAA TCTACTCCAG GAATCAACGC TCACCAAAGC
AAAGAACAGC AAGCCGTGGC ACAAGATTTT ATCAAGTTCA TTCTCGCTAA CGACGCTTTT
ATTCGCTCTG CAGTGAAACA TCTGAACTCG TTCCCAGCGA AGAAATCGCT ACAGAACGAT
CCAGAGATTC TCAAGGCCCC GGTAATGGCG GCTATTCAGC CTCGCGTGAA TAGGTTGATT
TGGCCAGGCA TCACTCCTTC TACGGTGGAA ACCAGCAGCA AGGCAGCGTT CCAAAACGTT
ATGCAAAATG GTCAATCTAT TGATTCCGCA GTAAAAGAAG CACAGGCGAC CATGGTAAAA
GACATGAAGA ATTCCAACTT TAAGTCTGCA GAAAGCAAGT ATGAATTCTT CAAAGAACAC
AAGTAA
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| Protein sequence | MNIRKMFISC VAVLGMLASV SACGSNSAGV TDTKKDKGLP VMGEALKYDP NHLVNQGKPI
ALEYWSWGDS STDPIYDMIK QYTKIYPNVT FKTKNVAWDD YWTKLPLVLK GKSGPALFNI
HNSKDELIRP YSADYNVDKA AMEADYSSSV AHEDANGKVK YIDSVINTGN IYYNKKLWKE
AGLTEADIPT TWEELREVAK KLTKWNGSKM VQAGFNVNGD AYAAINQGLN YQRGELAFDK
SGKKPNFDNK ITRENMQFLK NLYDKDKVIA TDFGTDYTQS FGNGQSGMVY AWGWLEGLLK
EKYPNVEYGI FPTPTFTKET PFAYDRYNGE STPGINAHQS KEQQAVAQDF IKFILANDAF
IRSAVKHLNS FPAKKSLQND PEILKAPVMA AIQPRVNRLI WPGITPSTVE TSSKAAFQNV
MQNGQSIDSA VKEAQATMVK DMKNSNFKSA ESKYEFFKEH K
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