Gene HMPREF0424_1282 details

Gene Information

• Locus tag: HMPREF0424_1282
• Symbol: dnaK
• ID: 8709477
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: -
• Start bp: 1531191
• End bp: 1533074
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 646483370
• Product: chaperone protein DnaK
• Protein accession: YP_003374471
• Protein GI: 283783717
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0443] Molecular chaperone
• TIGRFAM ID: [TIGR02350] chaperone protein DnaK

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 27
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGGACGCG CAGTAGGTAT TGATTTGGGA ACAACCAACT CTTGCATTGC TACTCTTGAA 
GGTGGCAGCC CAACAGTTAT TGTAAACGCT GAAGGCGCAC GTACCACGCC ATCTGTTGTG 
GCATTCAGCA AGTCTGGCGA AATCTTGGTT GGTGAAGTTG CTAAGCGTCA GGCTGTAACA 
AACGTTGATC GCACGATTAG CTCAGTAAAG CGTCATATGG GCACTGATTG GACTGTTGAT 
ATCGACGGCA AGAAGTGGAC TCCACAAGAG ATTTCTGCAC AGGTTTTAAT GAAGTTGAAG 
CGCGATGCTG AAGCTTACTT GGGCGAGCCG GTAACCGATG CCGTTATTAC ATGCCCAGCT 
TACTTCAACG ATGCTCAGCG TCAGGCAACT AAGGATGCAG GTAAGATTGC AGGCTTGAAC 
GTGCTTCGTA TTATTAACGA ACCAACTGCT GCAGCTTTGG CTTACGGCCT CGAAAAGGGC 
AAGGAAGACG AGCGCATTTT GGTATTCGAC TTGGGTGGCG GTACTTTCGA TGTGTCCTTG 
CTTGAAATTG GTAAGGATGA TGACGGATTC TCCACAATTC AGGTGCAAGC AACTAATGGC 
GATAACCACT TGGGTGGCGA CGACTGGGAT CAGAAGATTA TCGACTGGCT TGTTGGCGAG 
GTTAAGAACA AGTATGGCGT TGATTTGAGC AAGGATAAGA TTGCTTTGCA GCGCTTGAAG 
GAAGCTGCTG AGCAGGCAAA GAAGGAGCTT AGCTCTTCTA CTTCCACCTC AATTTCTATG 
CAGTACTTGG CAATGACTCC TGACGGCACT CCAGTGCATT TGGATGAGAC TTTGACTCGT 
GCTCACTTTG AGGAAATGAC TTCCGACTTG CTCGGCCGCT GCCGTACGCC ATTTAACAAC 
GTTCTTTCTG ACGCTGGAAT TTCAGTAAGC CAGATTGATC ACGTGGTTCT TGTTGGTGGC 
TCTACTCGTA TGCCAGCTGT GAAGGATTTG GTGAAGGAAC TTACTGGCGG TAAGGAAGCT 
AACCAGTCCG TGAACCCAGA TGAAGTCGTG GCCGTTGGTG CAGCCGTGCA GTCGGGCGTT 
ATTAAGGGAG ATCGCAAAGA CGTTCTGCTT ATTGATGTAA CTCCACTTTC CTTGGGTATT 
GAAACCAAGG GTGGAATTAT GACAAAGCTT ATTGAGCGTA ATACCGCAAT TCCAACTAAG 
CGCTCGGAAG TATTCTCTAC TGCTGAAGAC AATCAGCCAT CCGTGTTGAT TCAGGTTTAC 
CAGGGCGAAC GTGAGTTTGC TCGCGATAAC AAGCCTCTTG GCACTTTTGA GTTGACTGGA 
ATTGCTCCAG CTCCTCGTGG CGTTCCGCAG ATTGAAGTCA CTTTCGATAT TGATGCTAAC 
GGCATTGTGC ACGTTTCCGC TAAGGATAAG GGCACTGGTA AGGAACAGTC CATGACTATT 
ACCGGTGGTT CTGGTTTGCC AAAGGACGAA ATTGACCGCA TGGTGAAGGA AGCTGAAGCT 
CACGAAGCTG AAGATAAGAA GCGTAAGGAA GAAGCTGAAG TTCGCAACCA AGCAGAAGCC 
TTTGCTTACC AGACTGAAAA GCTTGTGAAC GACAATAAAG ACAAGCTTTC CGATGAAATC 
TCTAAGGAAG TTACCGACAA GGTTAATGCT TTGAAGGAAG CTTTGAAGGG TGACGACGTT 
GAGAAGATTA AGTCTGCTCA AAGCGAGTTG ATGACTTCTG CTCAGAAGAT CGGTCAGCAG 
CTTTACGCTC AGCAGGGTGC TGCTGGTGCC GAAGCTGGCG CTCAGTCTGC TGCTGGCGCT 
CAGGCTGGCT CTGCAGCTAA GGATGATGAT GTAGTTGACG CCGAAGTGGT GGACGACGAC 
AAGGACGATA AGGACAATAA GTAA 

 

Protein sequence

MGRAVGIDLG TTNSCIATLE GGSPTVIVNA EGARTTPSVV AFSKSGEILV GEVAKRQAVT 
NVDRTISSVK RHMGTDWTVD IDGKKWTPQE ISAQVLMKLK RDAEAYLGEP VTDAVITCPA 
YFNDAQRQAT KDAGKIAGLN VLRIINEPTA AALAYGLEKG KEDERILVFD LGGGTFDVSL 
LEIGKDDDGF STIQVQATNG DNHLGGDDWD QKIIDWLVGE VKNKYGVDLS KDKIALQRLK 
EAAEQAKKEL SSSTSTSISM QYLAMTPDGT PVHLDETLTR AHFEEMTSDL LGRCRTPFNN 
VLSDAGISVS QIDHVVLVGG STRMPAVKDL VKELTGGKEA NQSVNPDEVV AVGAAVQSGV 
IKGDRKDVLL IDVTPLSLGI ETKGGIMTKL IERNTAIPTK RSEVFSTAED NQPSVLIQVY 
QGEREFARDN KPLGTFELTG IAPAPRGVPQ IEVTFDIDAN GIVHVSAKDK GTGKEQSMTI 
TGGSGLPKDE IDRMVKEAEA HEAEDKKRKE EAEVRNQAEA FAYQTEKLVN DNKDKLSDEI 
SKEVTDKVNA LKEALKGDDV EKIKSAQSEL MTSAQKIGQQ LYAQQGAAGA EAGAQSAAGA 
QAGSAAKDDD VVDAEVVDDD KDDKDNK