Gene HMPREF0424_1279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1279 
Symbol 
ID8708939 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1528623 
End bp1529219 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content43% 
IMG OID646483367 
Producttranscriptional regulator, MerR family 
Protein accessionYP_003374468 
Protein GI283783714 
COG category[K] Transcription 
COG ID[COG0789] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACCAA TAACGCGTGA AACTAAAGCA CTGTATGAAA TGTGTGCAGT TGCTTTAGTG 
CGTGGTACTG CAACGCTTGA CGGGGCAGAT GAAGTAGGAT TTGTTCTTGA TTTGCCAATA 
TTTACCGTAA GCCACGTGGC ACGCCTAACT AATACGCATC CGCAAACTTT ACGACAGTAT 
GATCGGCTTC ATTTAATAAT GCCGCATAGA ACTGAAGGTG GCGCTCGCCG CTATTCTTTG 
CGAGATATAG ACAGGATTGT GCAAACTCAG CATTTAAGCC AAAATGAAGG CATTAATCTT 
GCTGGCATCA TGCAAATACT TGATTTGCAA GAAGAAAATC GACAGCTGAA AAGACAAGTA 
CGGCATTTGT TAGATTCTGC AGAGTCTTCA GAGCGCAATA TTTTTGCTGC AAATGCAGAT 
GGTGACATTG TGGAAATGCA GCGTTCTCGC AATGCGCGTC GCTGGAGGCG GGATATTCTT 
GCAGAGAGAC GAGCGTTACC TTCGTCGTAT TCTTCAGAAA GCTATAACAG TAATTATAAA 
AATCGAAAGT CTTTGGATGA AAAATCTGTG GTGTTGTGGA GAGCGTGGAG CATATAG
 
Protein sequence
MTPITRETKA LYEMCAVALV RGTATLDGAD EVGFVLDLPI FTVSHVARLT NTHPQTLRQY 
DRLHLIMPHR TEGGARRYSL RDIDRIVQTQ HLSQNEGINL AGIMQILDLQ EENRQLKRQV 
RHLLDSAESS ERNIFAANAD GDIVEMQRSR NARRWRRDIL AERRALPSSY SSESYNSNYK 
NRKSLDEKSV VLWRAWSI