| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1278 |
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| Symbol | |
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| ID | 8709895 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1527740 |
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| End bp | 1528483 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646483366 |
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| Product | HAD hydrolase, family IA, variant 3 |
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| Protein accession | YP_003374467 |
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| Protein GI | 283783713 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGAAC AGACGACGAA TGTGTGTGTA AGTACTCTTA ACTCTAGTGA AGAAAAACAT
GTGTTGCGTG CAGTTTTTTG GGACATGGAT GGCACTCTTA TAGATTCCGA GCCGTATTGG
CATGAGTCGG AATTTTATTT AGTAAAAAAA TACGGTGGTT ACTGGGATGA AGATTTAGCT
TGGGAATGTT CCGGCGGATC CCTTGAAACT GTTGCCAATA AAATGATTCC AAGCGGTACA
AAACTTACTG TAGAAGAAAT CGGCAAAGGT ATGGTTGATT ACGTTGCTGC TCGTGAAGCT
GAATCCGTGC CATGGGTTCC AGGAGTTTTA GACGTACTTA AAAGCCTTAC GGATGCTGGC
ATTCCTTCAA TTTTGGTGAG TAATTCGCCG CGTTGTTTGG TTGAAAATAT TGTGAATCAC
GCTCCAGAAG GCGCTTTCGC TGGGTATGTG TGTGGAGATG ATGGATTTAA ACCGAAGCCT
AGTGCTGAGC CATATCTTGC TGCAGGAAAA ATGGTTGGCA TTGAGGGTAC GGACGAGGAA
GTTGCAAAGC AGATGGCTAA TTGCATTGCC ATAGAAGATT CTCTATCTGG TCTTACTGCC
GCAATTAATT CCGGAGCAAC TGTAATTGCA CAAACAGGTT TTTCGCGCGC AAACATATCT
GAAAGCAAGC ATCACGCAGA ACTTAACGGT TATGAAAATG TGACTGCTAA AATGCTTGAG
AACATTGTTT TGAGTCGAAA CTAA
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| Protein sequence | MAEQTTNVCV STLNSSEEKH VLRAVFWDMD GTLIDSEPYW HESEFYLVKK YGGYWDEDLA
WECSGGSLET VANKMIPSGT KLTVEEIGKG MVDYVAAREA ESVPWVPGVL DVLKSLTDAG
IPSILVSNSP RCLVENIVNH APEGAFAGYV CGDDGFKPKP SAEPYLAAGK MVGIEGTDEE
VAKQMANCIA IEDSLSGLTA AINSGATVIA QTGFSRANIS ESKHHAELNG YENVTAKMLE
NIVLSRN
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