| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1277 |
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| Symbol | |
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| ID | 8709201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1525321 |
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| End bp | 1527645 |
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| Gene Length | 2325 bp |
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| Protein Length | 774 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646483365 |
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| Product | transglycosylase |
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| Protein accession | YP_003374466 |
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| Protein GI | 283783712 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTGCAC GTAAAGATGG AAGACGAGCG TCTACTTCGC ATGAGAAAGC TACTCGAAGC
ATATCGTCAC AATCACAAAA AAATACGAAT ATGCCTTCAT CTGTCCCACC ACGCGGACAA
GAATCATATC GTCCAAATTC GTATTCTTTT GAATCAAACA AAAGCAGCCG TAATTCAAGA
TTCGAACGTT CTCGCGCAGC AACACGCAGA AGGCGTCGTA GAACTTGGCG AGGCAGACAT
CCTATTATTT TTTGGGCGCT TATCGTTATT TTTGTGCCAA TTTTGCTAGG CACAATTGTT
TTTGCTTATC TGTATGCAAC TACAGACATA CCGGCACCAG ACAAAGTTGC TATGGCAGAT
AAGACGAAAG TGTATTATTC AGATGGCAAA ACTGAATTAG GTTCGTTCGC TGAGCAAAAT
CGCGAAATTA TCAATTGTTC AGTACTACCT AAATATGTTG GTAAAGCAAT AGTTGCTTCA
GAAAATCGTT CCTTCTACCA CGATGGCGGA ATAGATTTTA AAGGAATTGG ACGCGCACTA
CTTCATAACA TCACAAAGCA CGGGCGTTGG GGCGGCTCAA CTATTACGCA ACAATATGCG
GAAAGATATT ATCTCGGTGA AACAAAAACT TATTTTGGAA AACTAAAAGA AGCTATTTTA
GCTTTGAAAA TTGCGCAAAC TCAAGATAAA AATACAGTAC TTTGCAATTA TATGAATACT
ATTTACTTGG GTAGAGGAGC ATACGGAATT CAAGCTGCAG CCAAAGCATA TTTCGGCATA
GAAGCAAAAG ATTTGTCACT TTCGCAAGCT GCACTTTTAG CAGGTATTAT TCCAGCACCA
AGTAGCTGGG ATCCTGCAAT TGGTCCAAAA GAAGCAGGCA TTCGTTTTAA GCGCGTGTTA
CGCATTATGA AAGAAGATGG CTACATTACA GCCTCTCAGG CAGCGCAAGC AAAAATGCCT
AAAACTATTA CTCAGACGAC TCAAAACATT TACGCAGGTC AACAAGGTTA CTTATTGCAT
ATGGTTCGCG ATGAGTTAAC TAGGAATGGC GCTTTTACAC AGGAAGATCT CGACAGTGGT
GGATATCGCA TTATTACTAC TATCGATAAA GCTAAGCAAG ATTTAATGTT CAAAGTTGCA
AGTCCTTCTC AAGATGGACG AGGAATTGTG CCAGAAGGAC TGCAAGTTGG CGGAATTTCA
ATAAATGCAA AAGATGGTTC AATCATTTCC GTTTACGCAG GAGACGATTA TCTAAAGAAA
CAGCTTAATA ACGCCACACA AGCGCTTTAT GAGCCAGGCT CTACTATGAA GCCTTTTGCG
CTTATGGGAG CAATTCAGGC TGGCACTAGC TTGGATACGA TGTTCAATGG CAATTCTCCA
CGCAAGTTTG ATGGGATCGA TAAACCTGTT GGAAACTTTG CAAACATGAG CTATGGCACC
ATTAACTTAT ACAATGCAAC TGCAAATTCT GTGAACACAG TGTATATGGA TTTGCAAAGT
AAACTTGGCG CTAAAAAAGT TGCTCATACC GCAGTTATGG CAGGCTTAAA TCCTGAACGA
GTCAATGGTA AGAATCCGTT TACTGTGCTC GGAAACGATT CTGTACATGT AAGCGAAATT
GCGCGCGCAT ATGCAACATT TGCAAACCAA GGAAGACGCC CAGATTTGCA TATTGTTGCC
AGCGTAAAAA ATCCTGACGG TAAAGAGTTC TACCGTGCAC CAACAGCTGG AAAGCAAGTA
TTCTCACCAG CCGATGCCGC TCTAGCTACA AAAGCAATGA TTGGCGTAGT GCAACATGGT
ACAGCAACTG AAGCTCGCGC TGTAGGTAGA GAAATTGCAG GAAAGTCTGG AACAGCAAAC
GATGAAACTG CTGGTAGCTT TGTAGGATTT ACGCCAAATA TTGTTACCGC ATTTGCCATA
TGGAATCCAG ACGCAAAAGG TAGCCCACAA GTAATTAAAC CGTTCCACGG ATATCTTGGC
GGAAGCGACT ACCCTGTACA CTTGTTTACA AGATACATGC GTCAAGCGGT AATAGGAACC
CCGAATACTA AATTCCCTGA AGCAAAAGAC ACAGGCAAAA TTGGCGGACC TGATGGAAAA
TGGGGATTAG GCGAACAACA CACATTCACG CACGCAAAAA CTGAGAATGA AGATAAGGAT
AAAAACAAGG ACAAAGATAA AGACAAGGAC AACGACAACG ATTTAGACCT TGATAGCCAG
CTGTATGGTC GTGACGATTC ATCATCGGGC GGCGTTGGCA GTTACGATAA TAATTCTGGC
GGTCATGGTT ATGACAATAA CTATGACACA ACTGGAGGAA ACTAG
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| Protein sequence | MVARKDGRRA STSHEKATRS ISSQSQKNTN MPSSVPPRGQ ESYRPNSYSF ESNKSSRNSR
FERSRAATRR RRRRTWRGRH PIIFWALIVI FVPILLGTIV FAYLYATTDI PAPDKVAMAD
KTKVYYSDGK TELGSFAEQN REIINCSVLP KYVGKAIVAS ENRSFYHDGG IDFKGIGRAL
LHNITKHGRW GGSTITQQYA ERYYLGETKT YFGKLKEAIL ALKIAQTQDK NTVLCNYMNT
IYLGRGAYGI QAAAKAYFGI EAKDLSLSQA ALLAGIIPAP SSWDPAIGPK EAGIRFKRVL
RIMKEDGYIT ASQAAQAKMP KTITQTTQNI YAGQQGYLLH MVRDELTRNG AFTQEDLDSG
GYRIITTIDK AKQDLMFKVA SPSQDGRGIV PEGLQVGGIS INAKDGSIIS VYAGDDYLKK
QLNNATQALY EPGSTMKPFA LMGAIQAGTS LDTMFNGNSP RKFDGIDKPV GNFANMSYGT
INLYNATANS VNTVYMDLQS KLGAKKVAHT AVMAGLNPER VNGKNPFTVL GNDSVHVSEI
ARAYATFANQ GRRPDLHIVA SVKNPDGKEF YRAPTAGKQV FSPADAALAT KAMIGVVQHG
TATEARAVGR EIAGKSGTAN DETAGSFVGF TPNIVTAFAI WNPDAKGSPQ VIKPFHGYLG
GSDYPVHLFT RYMRQAVIGT PNTKFPEAKD TGKIGGPDGK WGLGEQHTFT HAKTENEDKD
KNKDKDKDKD NDNDLDLDSQ LYGRDDSSSG GVGSYDNNSG GHGYDNNYDT TGGN
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