| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1273 |
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| Symbol | topA |
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| ID | 8709654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1519537 |
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| End bp | 1522383 |
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| Gene Length | 2847 bp |
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| Protein Length | 948 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646483361 |
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| Product | DNA topoisomerase |
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| Protein accession | YP_003374463 |
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| Protein GI | 283783709 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.188892 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGCAC AGAATAAGCT AGTCATTGTG GAGTCTCCCA CGAAAGCGCG AAAAATTGGC
GGGTATTTAG GGAATGGCTA CACCGTCATG GCTTCAGTTG GGCATATTCG CGATCTCGCT
CAGCCAAGCC AAGTTCCAGC CTCACGCAAA GCAGCGTTTG GCAAGTTTGG TGTAGATGTC
GATCATGGTT TTGCGCCATA TTACGTAGTT GGCTCAGATA AAAAGAAAAC TGTTTCCGAT
TTAAAGTCTG CGCTCGCAAA AGCTGACGAA TTATATCTGG CAACTGATGA GGATCGCGAA
GGTGAAGCTA TTGCGTGGCA CTTGGTAGAA GCGTTGAAGC CAACTGTGCC AGTAAAGCGT
ATGGTGTTTC ATGAGATTAC TAAGGATGCA ATTCAAGCCT CGCTTAGTAA TACTCGAAAT
GTTGACGACA ATATGGTTGA TGCGCAAGAA ACTCGTCGTG TGTTAGACCG TTTGTATGGA
TATGAGCTTT CTCCTGTTTT GTGGAGGAAA GTTGGTCCTG GTCTTTCTGC TGGACGCGTG
CAGTCTGTTG CTACTAGGTT GATTGTTGAG CGCGAACGCG AGCGTATGGC GTTTACTAAG
GCGTCTTACT GGGATATTAG CGCGGTTTTA AGTTCTAAAG GCTCAGATGG CGAGAGTGTT
GATTTTGAAG CGCGCATGAG CGAGCTTTCT GGTCGTCGTT TGGCTGGTTC TAAAGATTTC
AATTCAAAAG GTGAGTTGGT CTCTACAAAA GATGAATCAC AAAAAGCTTT GCATGTTGAT
GCTGATTTTG CATCTAAGCT TTCTAAAGCT CTTGAGAATT CAGATTTTGT AGTTGACTCT
ATGGAAACGA AGCCGTATCG TCGTCGTCCT TTGCCACCTT TTACTACATC AACTTTGCAG
CAAACTGCTG GAAACCGACT TTCAATGAGC TCTCGCCAAA CTATGCGAGC TGCACAATCT
CTATACGAAA ACGGCTATAT CACTTACATG CGTACGGATT CCGTAACGCT TTCCAAAGAA
GCTATCGAAG CTGCGCGTAG TGCTGCTCGT GCAGCATTTG GCGACGAATA TGTTTCGCAA
TCTCCTAAGC AGTACGCAAC TACGTCTGCA GGAGCGCAGG AAGCTCATGA ATGTATTCGC
CCTGCTGGAG CGCGTTTCTT AAGCCCGGAC GAGCTTGCAG ATAAATTACC TGCGGATCAG
CTAAAATTGT ATACGCTTAT TTGGCAACGA ACCCTTGCGT CACAAATGGC TGATGCTACA
GGTTTTACAG CAACTGTTAA GTTAAATGCT TCTGCTGGAG AATATGGAGA AGCTTTGTTC
CAAGCTTCTG GAACAGTAAT TACTTTTGCT GGTTTTATGA AGGTTTTTGG CAATGCGCAT
GCATCTGAAG GTGAAAGCGA TAAGGCACTT CCTCAAATGC AAGCTGGGGA TGTTCTTGAA
GCTAAAAGTG TTAGTGCGGA TTCTCACGAA ACTCAGTCTC CTGCAAGATA TACTGAAGCT
TCTTTAGTTA AAACTTTGGA AGCTAAGGAA ATAGGACGCC CTTCTACTTA CGCAACGATT
ATTTCTACAA TTATTGATCG CGGATACGTG TATGAGCGTG GACGTGCGTT AATTCCTTCT
TGGCTTGCTT TTGCTGTAAT TAAACTTTTG GAAGCGAATT TCCCAAAGTA TGTTGATTAC
GCGTTTACTG CTGATATGGA AAATGGTTTG GACAGAATTG CGCACGGTGA AGAAACCGGT
CGCGATTGGC TAACTAGATT CTATTTCGGT TCCGGTGAGG GTGCTGCTAA TTCTGCTGAT
GAAGCTCATA TTGGTTTGCA ACAGCAGGTT GCAGAGCTTG GTGAAATTGA TGCGCGTGAA
ATAAATACCA TAGACATTGG CGATGGTTTG CATGTGCGTA TTGGACGCTA TGGTCCGTAC
TTGGAAGACA TTAAGAATCT TGATGCTGAA GGCAACCCTC GTCATGCTTC TTTGCCAGAA
ACTTTAGCTC CAGATGAGTT AACTGTTGAT GCTGCTCGAG AATTGCTTGA GAATAATGCT
GAAGGTCCAC GTGTGCTTGG AGTAGATCCA GAAACGGGTG GGAACGTAGA AGTGCGCAAT
GGTCGTTTTG GTCCGTACGT GGCACTGGTA GAAGAGCAGG ATAACGCGGA AGATTCTAAG
TCTTCTAAGG CTTCTAAAGC TCGTCCAAAA ATGGCTTCTT TGTTTAAAAC CATGGATCCA
GCGACTTTGA CTTTGCAAGA AGCGTTGCAA CTCTTGAATT TGCCACGTTT GGTTGGTGAG
TATGAAGAAG TTGATGCCGA AGGCGTTGTA AAACTAGCTC GTATCGAAGC AAATAATGGT
CGTTACGGTC CATATTTAAC TAAAACATAT TCTGCTGTAG ATACTTCTGC TGGAGAAACT
GTGGAATCTA AGCCGGATAC GCGATCCCTT TCTAGTGAAG ATGCTATTTT TACTGTTACT
TTGCAAGAAG CGAAAGATTT ATTTGCGCAA CCAAAGTACG TTAAGCGTAC TCGTGGTGCC
GCCAAGCCGC CTCTTCGTGA GCTTGGCGCA GATCCTGAAA CTGGAAAGCC AGTAGTGATT
AAGGATGGTT TCTACGGAGC TTATATTACT GATGGTGAAA CGAATCGCAC TTTGCCAAAG
CAGTATACGC CTGAATCGAT TGATCCGCAG GATGCGTTTG CACTTTTGGC GCAAAAGCGT
GCCGCAGGTC CCGTAAAACG CAAAAAGCGC GCGACTAAGA GCACTGCAAA ATCTTCTGAA
AAGAAGTCTA CTGCGAAAAA ATCTACCGCA AAGAAAACTT CTACAAAGAA GACTACTTCA
AAGAAATCTA CCGCTAAAAA AGCATAG
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| Protein sequence | MAAQNKLVIV ESPTKARKIG GYLGNGYTVM ASVGHIRDLA QPSQVPASRK AAFGKFGVDV
DHGFAPYYVV GSDKKKTVSD LKSALAKADE LYLATDEDRE GEAIAWHLVE ALKPTVPVKR
MVFHEITKDA IQASLSNTRN VDDNMVDAQE TRRVLDRLYG YELSPVLWRK VGPGLSAGRV
QSVATRLIVE RERERMAFTK ASYWDISAVL SSKGSDGESV DFEARMSELS GRRLAGSKDF
NSKGELVSTK DESQKALHVD ADFASKLSKA LENSDFVVDS METKPYRRRP LPPFTTSTLQ
QTAGNRLSMS SRQTMRAAQS LYENGYITYM RTDSVTLSKE AIEAARSAAR AAFGDEYVSQ
SPKQYATTSA GAQEAHECIR PAGARFLSPD ELADKLPADQ LKLYTLIWQR TLASQMADAT
GFTATVKLNA SAGEYGEALF QASGTVITFA GFMKVFGNAH ASEGESDKAL PQMQAGDVLE
AKSVSADSHE TQSPARYTEA SLVKTLEAKE IGRPSTYATI ISTIIDRGYV YERGRALIPS
WLAFAVIKLL EANFPKYVDY AFTADMENGL DRIAHGEETG RDWLTRFYFG SGEGAANSAD
EAHIGLQQQV AELGEIDARE INTIDIGDGL HVRIGRYGPY LEDIKNLDAE GNPRHASLPE
TLAPDELTVD AARELLENNA EGPRVLGVDP ETGGNVEVRN GRFGPYVALV EEQDNAEDSK
SSKASKARPK MASLFKTMDP ATLTLQEALQ LLNLPRLVGE YEEVDAEGVV KLARIEANNG
RYGPYLTKTY SAVDTSAGET VESKPDTRSL SSEDAIFTVT LQEAKDLFAQ PKYVKRTRGA
AKPPLRELGA DPETGKPVVI KDGFYGAYIT DGETNRTLPK QYTPESIDPQ DAFALLAQKR
AAGPVKRKKR ATKSTAKSSE KKSTAKKSTA KKTSTKKTTS KKSTAKKA
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