| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1272 |
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| Symbol | tmk |
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| ID | 8708979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1518785 |
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| End bp | 1519489 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646483360 |
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| Product | dTMP kinase |
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| Protein accession | YP_003374462 |
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| Protein GI | 283783708 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0125] Thymidylate kinase |
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| TIGRFAM ID | [TIGR00041] thymidylate kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.175586 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATCTA AAAATGACGA TTTTTCTGGT GGCTGCGCTT GCGGAGGAAA CTGCGGCTGC
AGAAGTGAGC AATCTTATGC AAATAAAGGC TTATTTATTT CTTTCGAGGG CATTGATGGC
GTTGGTAAAA CTACGCAAGT TGAGGCTCTT AAGGATTATT TGCAATCTTT GGGGCGAGAA
GTTGTAGTGA CGCGTGAGCC TGGCGGTACG CAGTTGGGTA AAACTTTGCG CGAAATACTG
TTGCATGGCA CGAGTGTATC TGCCAGAACA GAAGCTTTGC TTTTTGCTGC GGATCGTGCA
CAGCATGTTG CGCAAGTGAT TCGCCCGGCA CTTAGCCGTG GTGCAGTAGT AATAACGGAT
CGTTATATTG ATTCTTCGCT TGCTTACCAA GCAGGCGGTC GCGAATTGAC TATGGATGAT
GTGCGAACTT TAAGTGAGTG GGCAACGGAT TCGCTATGGC CTAATCGCAC TTATTTGCTA
GATATGCAAC CGGAAGATGC TTTTAAGCGT TTGCATCGCG AGCAAGATCG CATGGAATCA
GCTGGAATAG ATTTCGCTCG TCGCACTAGA GAAGCATTTT TAGATTTAGC GCAGGAGTCT
GCAGATCGTT ATCGCGTATT AGACGCAACG TTCTCGGCGA AATCATTATT TGAACTTATT
GTGCAAGACG TACATAACTT AATTAAAGAA ATTGAAACTA AATAA
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| Protein sequence | MASKNDDFSG GCACGGNCGC RSEQSYANKG LFISFEGIDG VGKTTQVEAL KDYLQSLGRE
VVVTREPGGT QLGKTLREIL LHGTSVSART EALLFAADRA QHVAQVIRPA LSRGAVVITD
RYIDSSLAYQ AGGRELTMDD VRTLSEWATD SLWPNRTYLL DMQPEDAFKR LHREQDRMES
AGIDFARRTR EAFLDLAQES ADRYRVLDAT FSAKSLFELI VQDVHNLIKE IETK
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