| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1264 |
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| Symbol | |
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| ID | 8709354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1511626 |
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| End bp | 1513158 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646483352 |
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| Product | PTS system, IIBC component family protein |
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| Protein accession | YP_003374454 |
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| Protein GI | 283783700 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3037] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00313074 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACATTG TAGTTCAGGT TTTAAATTTC ATAAGTCAGC AGATTTTGAA TGTGCCGGCT
TATTTGATTG GTATTATTGC AGCAATCGGT CTTATCGCAC TCAAGCGTAG TGCAGGACAG
GTGATTGCAG GTGGCTTAAA AGCTGCTATG GGTTACCTCA TTTTGGGTGC AGGTGCTGGC
GTTGTTGTTG GCGCTCTTGC TCCATTTGGT GACTTGGTTT TGAAGTCTAC TGGTGCTCAT
GGTGTTGTAC CTACAAATGA GGTTATTACT GCTCAGGCTG CAGGTCAGTA CGGTGCTACT
TCTGCGTACA TTATTGTGCT CAGCTTCGTT CTTATGCTTC TTGCTGCACG CTTTACTCCT
CTGAAGTACA TATTCTTGAC TGGTCACCAC ATGGTGTTCA TGTCTATGCT TTTGGCTCTA
GTTCTTTCCG TTGGTTTTGG CGCAAGCAAC CAGTTGCTTA TTGTTATTGT CGGCTCTGTC
ATTATGGCAA CGGTTATGGT TGTTCTGCCA GCTTTTGCGC AGCCTTTTAT GAACCGTATT
ACTGGTAGCG ATAAGCTCTC GATTGGTCAC TTTAACTCCT TAAGTTACAT TGTTTCTGGT
GCTGTTGGTG CTGCTGTTGG TAAGAAGTCT AAGTCTACTG AAGATATCAA CTTCCCTAAG
GGATTGAGCT TCTTGCGTGA TTCAATGGTC TCCACGACTT TGTTGATGGT TGTGCTGTAT
TTGGTATTCG CAGTGTGGGC TTCGGTTGTG TTGCCAGTAA AGGAACTCTT CAAGATTTTC
GCGTCTCATC CTACGGACTA TAGTGCCTTC TACATGGCGG CTTTTGCTCA GGCTTTGCAA
TTTGGAATTG GTGTTAGTGT CATCCTCTAC GGCGTTCGTA TTATTTTAGG TGAATTGGTT
CCTGCATTCC AGGGTATTGC TAACAAGGTC GTTCCAGGCG CTCGTCCAGC ATTGGATATT
CCAATCGTAT TCCCATACGG TGCTAATGCT TCTCTTATTG GCTTCTTGTC TTCCTTCGTT
GGAGGTCTTG TAGCTCTCGG ACTTATTGCA ATTTGGATGG GTCCAGCTTG GGGATTGGCA
TTAATTCTCC CAGGAATGGT GCCTCACTTC TTCGATGGTG GTGGTGCAGG CGTGTTTGGT
AATGCAACCG GTGGTCGTCG TGGTGCTATT CTCGGTGGTT TTATTAACGG TTTAATTATT
ACATTCCTTC CAGCAGTATT GCTTACTGTT ATGGGTTCCT TCGGCTTGGC AAACTCCACC
TTCGGCGATG CTGACTTTGG TTGGATTGGT ACTGTTGTGG GTAACTTCGC TCACCTCGGT
GCTGGCGTTG GTGCTATAAG CTTGATTATT GTTGCTGTTA TTCTGTTCGC CTTGGCTTGG
GTATGGCAGG TTAAGGTTGT TAACACTGGC TGGCTTCCTG CAGTAAAGCA TGCTGAGTTC
ATTGAAGAAA TTAAGAAGCA AGAGCGTGCT GCTAAGAAAG CAGCTATGGC AGCTAAGGCT
GCTGAAACTC ATGAGGAGGC TGTTACAAAA TAA
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| Protein sequence | MNIVVQVLNF ISQQILNVPA YLIGIIAAIG LIALKRSAGQ VIAGGLKAAM GYLILGAGAG
VVVGALAPFG DLVLKSTGAH GVVPTNEVIT AQAAGQYGAT SAYIIVLSFV LMLLAARFTP
LKYIFLTGHH MVFMSMLLAL VLSVGFGASN QLLIVIVGSV IMATVMVVLP AFAQPFMNRI
TGSDKLSIGH FNSLSYIVSG AVGAAVGKKS KSTEDINFPK GLSFLRDSMV STTLLMVVLY
LVFAVWASVV LPVKELFKIF ASHPTDYSAF YMAAFAQALQ FGIGVSVILY GVRIILGELV
PAFQGIANKV VPGARPALDI PIVFPYGANA SLIGFLSSFV GGLVALGLIA IWMGPAWGLA
LILPGMVPHF FDGGGAGVFG NATGGRRGAI LGGFINGLII TFLPAVLLTV MGSFGLANST
FGDADFGWIG TVVGNFAHLG AGVGAISLII VAVILFALAW VWQVKVVNTG WLPAVKHAEF
IEEIKKQERA AKKAAMAAKA AETHEEAVTK
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