| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1262 |
|---|
| Symbol | |
|---|
| ID | 8709889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1509133 |
|---|
| End bp | 1510740 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646483350 |
|---|
| Product | peptidase family C69 |
|---|
| Protein accession | YP_003374452 |
|---|
| Protein GI | 283783698 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4690] Dipeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00827684 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCATGCA CAACAATTCT TGTTGGTAGA AAAGCAAGTT ACGACGGATC CACGCTTATT
GCGCGTAACG AAGACTCGGC AAATGGCGAG TTTAATCCGA AGCGTTTAGT GGTAGTAAAG
CCGGAAGATC AGCCTCGCGT TTATAAGTCT GTTCTTAGCC ACGTAACAGT CGAGTTGCCG
GATAATCCAA TGCAATACAC AAGCGTGCCA AACGCAGACT TGCGCGAAGG AATTTGGGGA
GAAGCTGGCG TTAACGAAGC AAACGTGGCG ATGAGCGCAA CCGAAACGCT TACATCTAAC
GAGCGTGTGT TAGGCGCAGA TCCAATGGTT GAGCTTCAAA AAGAACAAGG CAAAGTTGGG
GATGCTGACT ATAAGCCGGA AGTGCCGGGT GGAATTGGCG AAGAAGATTT CTTAACGCTT
GTTTTGCCTT ATATTCGTAG CGCTCGCGAA GGCGTTGAGC GTTTGGGTGC ATTGCTTGAA
AAGTACGGCA CTTATGAGAT GAATGGCGTT GCGTTCTCCG ACGTGAACGA GATTTGGTGG
TTTGAAACCG TTGGTGGTCA TCATTGGATT GCTAAGCGTG TGCCGGATGA AGCTTATGTT
GTTATGCCAA ACCAGCTTGG AATTGACGAG TTTGATTTAG ATGATGCTTT TGATCTTCAA
GAAGAGCATA TGTGCTCGGC TGATTTGCTT GAGTTTATTG AAGAAAATCA CTTGGATTTG
TCGGTAGAAA ACGCTTCTCC TTTCAATCCT CGCGACGCCT TCGGCTCTCA TTCGGATGCC
GACCACGTGT ACAACACTCC TCGTGCATGG TTCATGGAGC GCTTCTTGAA TCCGTATGAC
GAAGTGTGGG ATGGTAAAGA CGCTGATCAT CGTCCGGACA GCAACGATAT TCCTTGGGCT
CGCCAGCCTG AGCGCAAGGT AACAATTGAA GACGTTAAGT ACGTTTTGAG CTCTCACTAT
CAGGGCACTG AGTATGATCC TTACGGCAAG CTTGGAGATG AGCATACTCG TCACATGTTG
CGTCCAATTG GCATTAACCG TCAAAGCGAG CTTGCTGTAA TGCAAATCCG CCCTTACATG
CCGGAAGCGA TACGTGCAAT TCAGTGGATT ACTTACGGTT CTAATCCTTT CAATTCTTTG
ATTCCGTTCT ATCCAAACGT AAATCGCACT CCAAAGTATT TGGAAGATAC GACTACTCGC
GTAACAAGCG AAAACTTCTA TTGGGAGAAT CGCATTATTG CTGCTCTTGC GGATGCCGCA
TTTAACGATA CTGCAAACTC GATTGAGCGC TACCAGGAAG TTGTCGGTTC CCTTGGTCAC
GCAATGGTCA AGTCTACGGA TGCTGCCGTG GCAGATCTTC TTGGCGTTGA TTTGGCTGAT
TACGAGCCAG AGCGTGAAGA TAATGAAGGC GAAGATTACG ATGATTTAGT TCGCGATCCT
GAAGCTATTA TTGCAGAGCT TCGCAACGAC AAAGTGCGCG AGGTTTTGGC TGAAGCAAAT
GACGATATGG CAGCAAAGTT GAAGAAAGAA ACCGATTCTT TGCTTGACAC AGTTCTGTAC
ATCACTAGTA TGCGTATGAA GAATGGTTTT AATCGTTCTG ATCACTAA
|
|---|
| Protein sequence | MACTTILVGR KASYDGSTLI ARNEDSANGE FNPKRLVVVK PEDQPRVYKS VLSHVTVELP
DNPMQYTSVP NADLREGIWG EAGVNEANVA MSATETLTSN ERVLGADPMV ELQKEQGKVG
DADYKPEVPG GIGEEDFLTL VLPYIRSARE GVERLGALLE KYGTYEMNGV AFSDVNEIWW
FETVGGHHWI AKRVPDEAYV VMPNQLGIDE FDLDDAFDLQ EEHMCSADLL EFIEENHLDL
SVENASPFNP RDAFGSHSDA DHVYNTPRAW FMERFLNPYD EVWDGKDADH RPDSNDIPWA
RQPERKVTIE DVKYVLSSHY QGTEYDPYGK LGDEHTRHML RPIGINRQSE LAVMQIRPYM
PEAIRAIQWI TYGSNPFNSL IPFYPNVNRT PKYLEDTTTR VTSENFYWEN RIIAALADAA
FNDTANSIER YQEVVGSLGH AMVKSTDAAV ADLLGVDLAD YEPEREDNEG EDYDDLVRDP
EAIIAELRND KVREVLAEAN DDMAAKLKKE TDSLLDTVLY ITSMRMKNGF NRSDH
|
|---|
| |