Gene HMPREF0424_1256 details

Gene Information

• Locus tag: HMPREF0424_1256
• Symbol: metG
• ID: 8709544
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: -
• Start bp: 1502264
• End bp: 1504141
• Gene Length: 1878 bp
• Protein Length: 625 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 646483344
• Product: methionine--tRNA ligase
• Protein accession: YP_003374446
• Protein GI: 283783692
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0143] Methionyl-tRNA synthetase
• TIGRFAM ID: [TIGR00398] methionyl-tRNA synthetase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 6
• Fosmid unclonability p-value: 0.000206162
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

TTGTCTATGA GTCATATTTT GGTGAATGTT GCTTGGCCGT ATGCTAACGG CCCTCGTCAT 
ATTGGTCACG TCGCAGGCTT CGGGGTCCCA TCAGACGTAT ATGCGCGTTA CGAGCGCATG 
AAAGGTAATG ACGTATTAAT GGTGTCTGGC ACGGATGAGC ACGGTACACC TATTTTGGTT 
GAAGCAGATA AGGAAGGTGT TTCTGCACAA GAGCTTGCTA ATCGTTATAA TCGTGTGATT 
ACTAAGGATT TGTGCGATTT AGGTTTGAGC TACGATTTGT TCACGCGTAC TACCACTGCA 
AATCACGAGC ATGTTGTGCA AGAAATGTTC CGTCAGTGCT TAAAGAACGG CTATATTTAC 
AAGGGCACTC AGAAGGTTGC TATTTCTCCT TCCACTGGTC GTACTTTGCC AGATCGTTAT 
ATTGAAGGCA CATGCCCATT GTGTGGCGCA GATGGTGCTC GTGGCGATCA ATGTGATGCT 
TGTGGAAACG AGCTTGATCC GGATGAGCTT ATTAATCCAG TTTCTAAAAT TAATGGTGAA 
ACTCCGCGCT TTGAAGAAAC TGAACATTAT TTCCTAGATT TGCCTGCTTT GGCTGAAGCG 
AATGTTAACT GGCTTCATTC TCGCGAAGGT TGGCGCACGA ATGTTATTAA TTTCTCGCTT 
GGATTATTTA ATGAAGTAAA GCCGCGAGCT ATTACGCGCG ATATTGATTG GGGCATTCCT 
GTTCCTGTTG AAGGATGGAT TGATAATCCA AATAAGCGTT TATATGTTTG GTTTGATGCT 
GTTATTGGCT ACTTGTCTGC ATCTATTGAA TGGGCTCGTC GACAAGGCAA GCCAGAGGCT 
TGGCGTGATT GGTGGTGTGA TCCTAAGTCT CCTGGATACT ACTTCATGGG CAAAGATAAC 
ATTACTTTCC ATTCTCAGAT TTGGCCTTCG GAAATGCTTG CCTACAACGG TGCTGGTTCT 
AAAGGTGGTG AGGCTGGCAT TTATGGCCCA TTGAACATGC CTGAACAGGT TGTTGCTTCT 
GAGTTCATGA CTATGGAAGG CAAGAAGTTC AGCTCTTCGC GCGGAATCGT GATTTATGTG 
AAGGATATTT TGGCACGTTA CCCTGTAGAT GCTGTGCGTT ACTACATTTC TATTGCGGGT 
CCAGAAAATT CTGATGCTGA TTTTACTTGG GCTGAGTTTG CTCGTCACAA TAACGAAGAA 
CTTGCTGCAA GCTGGGGTAA TCTTGTCAAT CGTGTGGCAA ATCTTATTAA TAAGAACTTT 
GGTGTAATTC CTCCTCTTGA TGAAGATTCT ATGACTGCAA TGGATCGCGC TCTTCTCGAT 
CAAACTTCTG ATGCTTTTGC TTTGGTTGGT AGTTTGATTG AGCGTCATCG TCAGAAGAAT 
GCTCTTACTG AAGCAATGCG AGTAGTTGCG GATATTAATA AATATATTTC TGCAACTGAG 
CCTTGGAAAA TTAAAGATGA TGAGGCTCGC CTTGGTACTG TGTTGCATGT TGCAGCTCAG 
GCTGTTTCGG ATGCTAATCA TCTGCTTGCG CCATTCTTGC CTCATGCAGC TCAAAAAGTT 
TGGGAAGCAC TTGGTGGCAC TGGCGTATTC TCGCCTTTGC CTCATATTGA AGAAGTTGAA 
GATTTGGATA ATCCAGACTT CAAGTATCCG ATTATTACGG GCGATTATCG CTTGGGGGAA 
ACTGTTCATC CTTGGGAGAG TGAGGAGTTG GTAGCAGGTA CGCCTGTGCC TAAGCCAAGT 
CCTATTTTTG CCAAGATTTC AAAAGAAGCA GTTGAGGAGG AGCTTGAGCG TTTTGCATCT 
GCTTTGTCCG AGCGTCAGCG TGTCGAAGCG GAAAGACTTG CTGCAGCAAA AAAATCTTTG 
GAAAATAGTG AGAAATAG 

 

Protein sequence

MSMSHILVNV AWPYANGPRH IGHVAGFGVP SDVYARYERM KGNDVLMVSG TDEHGTPILV 
EADKEGVSAQ ELANRYNRVI TKDLCDLGLS YDLFTRTTTA NHEHVVQEMF RQCLKNGYIY 
KGTQKVAISP STGRTLPDRY IEGTCPLCGA DGARGDQCDA CGNELDPDEL INPVSKINGE 
TPRFEETEHY FLDLPALAEA NVNWLHSREG WRTNVINFSL GLFNEVKPRA ITRDIDWGIP 
VPVEGWIDNP NKRLYVWFDA VIGYLSASIE WARRQGKPEA WRDWWCDPKS PGYYFMGKDN 
ITFHSQIWPS EMLAYNGAGS KGGEAGIYGP LNMPEQVVAS EFMTMEGKKF SSSRGIVIYV 
KDILARYPVD AVRYYISIAG PENSDADFTW AEFARHNNEE LAASWGNLVN RVANLINKNF 
GVIPPLDEDS MTAMDRALLD QTSDAFALVG SLIERHRQKN ALTEAMRVVA DINKYISATE 
PWKIKDDEAR LGTVLHVAAQ AVSDANHLLA PFLPHAAQKV WEALGGTGVF SPLPHIEEVE 
DLDNPDFKYP IITGDYRLGE TVHPWESEEL VAGTPVPKPS PIFAKISKEA VEEELERFAS 
ALSERQRVEA ERLAAAKKSL ENSEK