| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1248 |
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| Symbol | |
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| ID | 8708795 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1489155 |
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| End bp | 1490135 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646483336 |
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| Product | hydrolase, TatD family |
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| Protein accession | YP_003374438 |
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| Protein GI | 283783684 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0084] Mg-dependent DNase |
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| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00116067 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTAAAC ATCATCGCGA ACATAATTGG GCGCCGGCTT TAGCAGCGCA ATCTGCAGTA
TGGGAAAATC TGCTACAAGA AGGCATAACA ATTGCAGACG ATCACACGCA CATGCTTAGC
GTTGTGGATT TTGCACATAA TTTGAATCAA GAATTAGCAG AAAAAGGTCG CGATTTAATA
GCGGAACCTA CTGCAGACGA TTTAGTTGCT CAAGCAAAAT CATCAGGCGT TTCACACATG
CTAGAAGTCG GATGTGAATA TCCAGATTGG GAGCCGACGA TTAAGTTTGC TCAAACGCAT
GAAAATTCAG TTCGTGCAGC AATAGCAATA CATCCAAACG AAGCAGTATT ACATGGTCAC
AAAGGCGCTC AAGGACCTGA CGGACTACCG ATAGTTTACA AGCCGTATCA CGATATTCCA
TTTGACGAAG CTATGCAACA TTTGCGCTCG CTAGTAATTG CTCATCCAAA AGAAGTAGTG
GCAATAGGTG AAACCGGTTT AGACTACTTT CGTACGGGAG AGCCTGCGCG AGAGGCACAA
ATAGAGGCTT TCCGCGACCA TATTGCGCTC GCAAAAGAGC TGAATTTACC TTTACAAATT
CACGATCGTG ATGCGCATGA AGACGTAGTG AAAGTCTTAC TAAAAGATGG CGCTCCTGAG
CGAACAGTAT TTCACAGTTA TGCTGGTGCT GTGGATTTAG CCGAAATATT GAAAGAGCAC
GGTTGGTACG CAAGTTTTTC TGGAACTATA AGTTACAAAG GCAATGATGA ATTACGCGAA
TCTGCGCGAA TTATTGGCAA AGACCATATA ACTGTTGAAA CGGATGCGCC TTATTTAACG
CCAATGCCGT ATCGTGGACG GCCAAACGCG CCTTATATGG TTCCTTATAC GCTAGAAACA
CTTTCTGAAG TTCTAAATAT ATCGTTATTG CAAGCAGCGA AAGTTACACG CGAAAATACG
CGAAAAATTT ACGAATTTTA G
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| Protein sequence | MSKHHREHNW APALAAQSAV WENLLQEGIT IADDHTHMLS VVDFAHNLNQ ELAEKGRDLI
AEPTADDLVA QAKSSGVSHM LEVGCEYPDW EPTIKFAQTH ENSVRAAIAI HPNEAVLHGH
KGAQGPDGLP IVYKPYHDIP FDEAMQHLRS LVIAHPKEVV AIGETGLDYF RTGEPAREAQ
IEAFRDHIAL AKELNLPLQI HDRDAHEDVV KVLLKDGAPE RTVFHSYAGA VDLAEILKEH
GWYASFSGTI SYKGNDELRE SARIIGKDHI TVETDAPYLT PMPYRGRPNA PYMVPYTLET
LSEVLNISLL QAAKVTRENT RKIYEF
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