| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1241 |
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| Symbol | |
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| ID | 8708781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1476112 |
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| End bp | 1478427 |
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| Gene Length | 2316 bp |
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| Protein Length | 771 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646483329 |
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| Product | surface-anchored protein domain protein |
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| Protein accession | YP_003374434 |
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| Protein GI | 283783680 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000212575 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTCAGG TCATTAGGGA TATTGTGAAA CGTGCTTTTG CAATGGCAAG TGTTGCAATA
CTTGCCATTG CCGTGCTCGC ATCAGGATTT AGTGCAGCTT TACCGGCAGT TGCATTAGAA
AATAGTAATC CTGGCGAAAA ATACGATCCT ACAAAAAAGG AAGTGCTAAG TCACGGCCAT
ACGGACGTAT TTTACCCAAT TCAATACAAC GGTAAATTCA TTATGGCCGT CGAAAAAGAC
GGTGCCACTT TCTTAAAGCC TGAAAACACT ACTTTGCGTG TAGCAAAAAA CACGTATACT
ACAAAATCGC AGCTTCCTGC GCTCGCTACT GAATACTACT ATCTCGATGG TTCCGGAAAT
CAAAAAGGAA ACCCCCTCTT CCCGGGTTGG GACACAGGTT ATGCTGCAAC TTTAGTTGGC
GCACCTCATG CAGATGACGC AACAGCAGAT ATTGCAATTC AGCAAGTTAC TGGACCAATG
AACGGGCGCA TTCTGCTTTG GACTACCGAT GGTGCTGGTA AAAATTCGAA GAAATTATCG
TTTGAAGAGA ACGATTTAGA CGACGAACCT GATACTGATG GCAGTCGATT TATGCTACCT
GGCGTAATTC ACCAACATAC TGCTGGCCAC GTGCATGCAA ACTGGGGATT TACGCAGCCT
GGCGTTTACA AACTAAAAGT AGCAGCAACT ATTACAAATA AGAACACTAA GAAGCAGATT
ACAACCGAAC CTGCAGAATA CACTTTTGAA GTAGAAGATA CATATTCAGG CGAAGTACCT
GCTGGCATTA CGGAAACGCT TGATTTGCAC CGTCGCGGTG ATTCTATTAA TCCTGACGAT
GATGAAGAAG CACACGAAGC TTCCAAAGAT CATAAAGACA CGGATAAAGA CGATGGCGGC
GATATGCGCA TCGGCAATAT TCGTGATTCC GGACCTCATC CGCATTATCA TTCATACGAA
GGTTATGGTG GTTTAGACTT AAAAGTAGTT AACAAACCAA AGGGTGCTCG TATTGAGTGG
AGATATGTGC GTGCTGACGA AGGTCCTGAC GCGTATGGAA CCACTCTTTT TGCTGAGAGA
TTGCAGCTTC CAGCTGAGCC TGCAATGAAC AAGATGAAAG TGTATGCTCA CGCAACTGAA
GGTGAAACGC AAGTTGGCAA AGATACTGCG TCTGCAACCA TCGCCGTTGA AGATCACGGT
GCTGACGGAC ATCCTGTAGT AAAAGCAATT GCTCCTTATA AGCGTTTCAA ACCAGGGGAT
ACTTTACACG CGAAAACAGT ATTGCTTAAC CCTCATGTTG CAACCGACGG TGTTACCGGT
GCGCCAATTG ACGATCCGAC AAGTCCAGTA ACTTCCATAG TCAAAGATTA TGTTTGGTTG
ATAAAAAAGG AAGGAGAAAG CGAATTTAAG CGCATTCCTG GTGCCGTGAA CAGCAAGTTG
GAGCTAAAAC TTGATGCGTC AATGCAAGGT GCAACGATTC GTCCTTCCTT AGTTTTAAAG
AACGGTGAAC TTTACCGTAA TAAAATGTTT GATGAGTTTT GCGATTATGT TATTGAGATG
AAAGGTGTTC CTCACTCTCA TAACCATGAT GGCGATGATG ATCAAAGTGG TTCTGATTCT
GAAGATGATG AGAACTCTCA CGGGAAAAAG CACCATGAGA AGCGTCGTAA TAAGCGCAAA
AATAAGACTA AGCATTTTGT TGGTGGAAAG AACTTTTTGA AAGGTGTATT CGGCGGCACT
GCAAATTCGG GACTATTTGG ATCTAGTTCT AATGGTGGAT TCCAATTCGA ATCTAATTTC
TTTAAGAAAT CCAACAGAAA ATTCAAGCGC ACAAAGAAGA ATCGCAATAA GACTAACCGC
ACTAATCGTA AGAATAATTC TAAAAATAAT ACGCAAAGTG GTGCTAGTTC TGGTTCTAGT
TCTTTTACAA GAACAGAAAA TTCAAGCGGA ACATCGTTAC ATAATTCATC GCGACGAACT
TCTGGCGGAA CTCATACTAA GAACAAGAGC TCTAAGAAAA GTGGACAGAC TATTCGTAAT
TTCGTAAGAA CAGATAATAA TTCTGGTAAT AAGTCTAAAA ATAGTTCTGT CAATAACTCT
GATTTTGTTA AGAATACTGA ACGTCATGCT TTGCAAGGTG CAAGGCAATA CAACGAAGAA
TCTGATGAAG CGTATGAAGA TGATTCAGAT GATACAAAAG GTGATGGTTC CTCGACTAAG
TGGGTTGCGG TTGCAGCTTC AGGTGCGAGC GTCGGCTTAT GCACAATAAC TGGCGCATGC
GGAGCATTGA TACGTTCTAA ATTGAAATTG TTGTAA
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| Protein sequence | MTQVIRDIVK RAFAMASVAI LAIAVLASGF SAALPAVALE NSNPGEKYDP TKKEVLSHGH
TDVFYPIQYN GKFIMAVEKD GATFLKPENT TLRVAKNTYT TKSQLPALAT EYYYLDGSGN
QKGNPLFPGW DTGYAATLVG APHADDATAD IAIQQVTGPM NGRILLWTTD GAGKNSKKLS
FEENDLDDEP DTDGSRFMLP GVIHQHTAGH VHANWGFTQP GVYKLKVAAT ITNKNTKKQI
TTEPAEYTFE VEDTYSGEVP AGITETLDLH RRGDSINPDD DEEAHEASKD HKDTDKDDGG
DMRIGNIRDS GPHPHYHSYE GYGGLDLKVV NKPKGARIEW RYVRADEGPD AYGTTLFAER
LQLPAEPAMN KMKVYAHATE GETQVGKDTA SATIAVEDHG ADGHPVVKAI APYKRFKPGD
TLHAKTVLLN PHVATDGVTG APIDDPTSPV TSIVKDYVWL IKKEGESEFK RIPGAVNSKL
ELKLDASMQG ATIRPSLVLK NGELYRNKMF DEFCDYVIEM KGVPHSHNHD GDDDQSGSDS
EDDENSHGKK HHEKRRNKRK NKTKHFVGGK NFLKGVFGGT ANSGLFGSSS NGGFQFESNF
FKKSNRKFKR TKKNRNKTNR TNRKNNSKNN TQSGASSGSS SFTRTENSSG TSLHNSSRRT
SGGTHTKNKS SKKSGQTIRN FVRTDNNSGN KSKNSSVNNS DFVKNTERHA LQGARQYNEE
SDEAYEDDSD DTKGDGSSTK WVAVAASGAS VGLCTITGAC GALIRSKLKL L
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