| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1233 |
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| Symbol | |
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| ID | 8709920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1466029 |
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| End bp | 1467171 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646483321 |
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| Product | D-ala D-ala ligase N-terminal domain protein |
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| Protein accession | YP_003374426 |
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| Protein GI | 283783672 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00000148623 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGAAAA AGCGTGTAGT GTTCTTGTAT GGCGGTAAGG CAGACGAACA TTCGATTTCT
TGCATATCCG CTGCTGGAGT GCTCAGTGCT GTAGACGAAA ATCGTTTTGA CATTGTGCGG
ATCGCAATCA CAAAACAAGG CGAATGGATT GTTGGTGGTG AAGATCCTCG TAACTTCCAC
ATGGAAGAGG GTGAGTTGCC AGTAATCACA AAAACCGCTG GAACGCGCGA TGTTGTGCTT
GACCCTGCCA AAGGCGCAGA CGGATTTTTA GCCCGCGAAA ATGACGGTAC ACTTACAAGT
TTGGGTCATA TTGACGCAGT TTTCCCAGTT CTTCACGGTC CAAACGGTGA AGATGGCACT
TTGCAAGGCT TGCTAGAAAT GATGCAAGTT CCATACGTTG GTTGTGGAGT GTTGGCTTCG
GCTGCGTGCA TGGATAAATA CTATGCAAAG CAACTGTTTA AAGCTGCCGG AATTGATGTT
GCTCCTGGAA TTGCACTTGA TGCGCGCAAG TTTGCAAGCG ACGCGGAAAA TCGCTTTGAT
GCATACGCAG AAGAAATTCT TGCTCAAGTT GAAGCAGCAA AACTCGAGTA TCCGCTTTTT
GTAAAGCCAA GCCGCGCAGG ATCTAGCTTT GGAGTTACAA AAGTTGAATC GCGCGATGCT
AAAGCCTTAG CAGAAGCTAT TTTTGAGGCT TCAGAGCACG ATTGGCGAGT GTTAGTAGAG
CAGGGAATTG ACGCTCGAGA AATTGAGTGC GCGGTTCTTG CAGCTCGCGA CGGCGAAGAA
CCGAAAGCAA GCTGGCCTGG AGAAGTTGTG CTAGACAAGC GCGAGGCTGG TGAAGACCAG
TTCTACGATT TTGACAGCAA ATACATGGAT TCCGCAGCTT CGCACGTTGA AGTTCCAGCA
AACTTGCCAG CGGAAACTTT AGAGCGCGTT CGCAAAACGG CGCTTGCAGC GTTCAAAGCG
GCAGATGGGC GGGGACTAAG TCGCGTAGAT TCTTTTGTAA CTAAAGATGG TCGCGTAATT
CTTAACGAAA TCAACACGAT GCCTGGATTT ACGCCAATCT CCATGTATCC AAAAGCTTGG
GAAGCAACTG GAATAAGCTA CAGCGATTTA ATCACAAAGC TTATTGAAGG CGTTTTGAAA
TAA
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| Protein sequence | MTKKRVVFLY GGKADEHSIS CISAAGVLSA VDENRFDIVR IAITKQGEWI VGGEDPRNFH
MEEGELPVIT KTAGTRDVVL DPAKGADGFL ARENDGTLTS LGHIDAVFPV LHGPNGEDGT
LQGLLEMMQV PYVGCGVLAS AACMDKYYAK QLFKAAGIDV APGIALDARK FASDAENRFD
AYAEEILAQV EAAKLEYPLF VKPSRAGSSF GVTKVESRDA KALAEAIFEA SEHDWRVLVE
QGIDAREIEC AVLAARDGEE PKASWPGEVV LDKREAGEDQ FYDFDSKYMD SAASHVEVPA
NLPAETLERV RKTALAAFKA ADGRGLSRVD SFVTKDGRVI LNEINTMPGF TPISMYPKAW
EATGISYSDL ITKLIEGVLK
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