| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1222 |
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| Symbol | cgtA |
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| ID | 8708864 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1451512 |
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| End bp | 1453194 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646483310 |
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| Product | Obg family GTPase CgtA |
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| Protein accession | YP_003374415 |
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| Protein GI | 283783661 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0536] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR02729] Obg family GTPase CgtA
[TIGR03595] Obg family GTPase CgtA, C-terminal extension |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000289684 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTGATT TTGTAGACCG CGTAACAGTG CATGTAAAAG GCGGAGATGG TGGAAACGGA
TCTGCCGGAG TTCGTCGCGA AAAGTACAAG CCATTAGCGG GTCCAAATGG CGGTAATGGC
GGTGACGGTG GTTCCGTTAT TTTTGTAGCT GATCGTAACG CAAACAGCTT ACTTGACTAC
CGCTTCATGC CTCACCGCAC TGCAGAAAAC GGTACGATGG GCTTAGGTGA CACTAAAGAC
GGTTCAAAAG GTGCAGACTT AGTGCTTCCG GTGCCTGTTG GAACTGTTGT TTTTACAGCA
CGCGGTGTCG CAGGCTCTCA AAAGCGACCT GGCGAAGTTT TGGCGGATTT GCAACATGTT
GGAGACAAAT TCGTTGTGGC GCAGGGGGGT GCCGGCGGTC TTGGCAACGC AGCACTCGCA
AACAAAACTC GTCGTGCCCC AGGATTCGCG CTTTTAGGCG AGCCTGGCGA AGAACGCGAT
GTAATTTTGG AACTCAAGTC TATCGCAGAC GTAGCTTTAG TTGGATTCCC TTCTGCAGGA
AAATCAAGCT TAGTTGCTTC AATTAGTGCA GCTAAGCCGA AAATTGCTGA CTATCCGTTT
ACTACTTTGG TGCCAAACCT AGGTGTTGTA AGCTTCGGCA ACTATCGCTA CACAATTGCA
GACGTTCCAG GCTTAATTCC AGGAGCTTCC GAAGGAAAAG GCTTAGGTCT TGAGTTTTTG
CGTCATATTG AGCGCACAGA AATTATTGCG CATGTAATCG ATTGCGCAAC GCTGGAGCCA
AATCGCGATC CAATTAGCGA TTACCACGCT CTTGAGCATG AGCTTGCGCA ATACGCTGAT
AAGCTTGAGC TTCCGTTGGG TGCAATCCCA ATTCCAGAGC GTCCGCGCAT TATTGTGCTA
AATAAAGTCG ATGTGCCTGA AGCTAAAGAA TTGGCTGATT TTGTACGCGG TGAATTTGAG
AAAATGGGAT TGACTGTATT TGAGATTTCT ACCGCGTCTC ACGAAGGCTT GAAAGAGCTC
GGTTTTGCGC TTGGACGATT GGTTGAAAAG ATGCGCGAGA AGCTCGCTGC CGAGGAAGCA
GCACGAGAAG AAGAGCGTGT TGTCATCCAG CCTCTTGAGC AGCAGACTTC AGCTTTGCGT
CGTCGCCGCG ATGATGGACG TGGAAATAGT GCAGACTTTG AAATTAAGCG CGAGGAAGAC
AGAAATGGTG ATTTTTGGTT CACTGTTACT GGCGCAAAAC CTGAGCGCTG GGTTATACAA
ACGAATTTCG ACAACGACGA AGCCGTTGGT TATTTGGCGG ATCGCTTGGC AAAGCTTGGC
GTTGAGGATG AATTGCGCAA GAAGGGCGCG CGTCCAGGAG ACGAAATTCG TATTGGCACT
GGGAATCATA TGGTTTGCTT CGACTGGGAT CCAAGTATCG CTGCCGGTGC AGAAGGATTG
GACGGCGCTA ACTTGGGTGC GCGTGGCAAG GATTTGCGAA TCGAAGCGAA CGATCCTCGC
GGAGCAAGGC GCACGAATGC TGAGCGTAGA CGAGATTATC ACAGCATGAT GGATGCAAAG
AGCGCAGTTC GAGACGCGAT GATGGCTGAG CGAAAGTCGG GTCACTGGGC GGATCCTTCT
GTGGATGACG ATCGCCATGA TGAAAATAGT TTGTTTGGTC GTGGAGAAGA GCAGAAAAAC
TAG
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| Protein sequence | MSDFVDRVTV HVKGGDGGNG SAGVRREKYK PLAGPNGGNG GDGGSVIFVA DRNANSLLDY
RFMPHRTAEN GTMGLGDTKD GSKGADLVLP VPVGTVVFTA RGVAGSQKRP GEVLADLQHV
GDKFVVAQGG AGGLGNAALA NKTRRAPGFA LLGEPGEERD VILELKSIAD VALVGFPSAG
KSSLVASISA AKPKIADYPF TTLVPNLGVV SFGNYRYTIA DVPGLIPGAS EGKGLGLEFL
RHIERTEIIA HVIDCATLEP NRDPISDYHA LEHELAQYAD KLELPLGAIP IPERPRIIVL
NKVDVPEAKE LADFVRGEFE KMGLTVFEIS TASHEGLKEL GFALGRLVEK MREKLAAEEA
AREEERVVIQ PLEQQTSALR RRRDDGRGNS ADFEIKREED RNGDFWFTVT GAKPERWVIQ
TNFDNDEAVG YLADRLAKLG VEDELRKKGA RPGDEIRIGT GNHMVCFDWD PSIAAGAEGL
DGANLGARGK DLRIEANDPR GARRTNAERR RDYHSMMDAK SAVRDAMMAE RKSGHWADPS
VDDDRHDENS LFGRGEEQKN
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