| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1215 |
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| Symbol | |
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| ID | 8709671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1442795 |
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| End bp | 1444636 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646483303 |
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| Product | LPXTG-motif cell wall anchor domain protein |
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| Protein accession | YP_003374409 |
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| Protein GI | 283783655 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000891817 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAAAAAGT TCACTAATAA ATTCGTGGCG GCGGTGGCGT CGCTCGCGAT GGCTGGCACG
CTGTGCGTCG CCGGCGCTGT AACTGTATCC AGCGTTGCGT GGGCTAATAA GCCTGGTGTT
TCACAACCTT CTGTTAATAA GGGTTCTAAG GCTCCATGGG AGAGTAAAGC TCCGACAACC
GGTAGTTTAA CTATTGTTAA GTGCAGGAAA AAGGATGTCT CTACAACTAC TACTACCGTT
GCTTCGTCTA GTACTGCTAA TGCGTCCGCA TCTAATGAGA CAGGCAAAAC GCAAGATACA
TCTTGCCCTG CTGGTTTTGA ATCTCTTAAA GATGTTAGTT TCACTGTAAC TAAAGTTGCA
TCCATTAAGG AAGGAACTAA TGATGTTACT TTGAATCTTG CTCAGTATGA TTCTTGGCAG
AAGATTGCTG GTATTGTTTC TAAGTTAAAT GCTCATCCGG AAGAAGCTGG AGTTGTAACT
CTTGGAACTG GAACTGATGT GCACAATATG ACTGCTACAG ACAAGGATGG TAAGTCTACA
CTTAATAATC TTTCTGTTGG TTTGTATAAG ATTGTTGAGA AGGTTCCTGA TGGTTATGGT
GCTTACGATT TCAGTAGTTT CTACATGACT TTGCCTTTGA TTGAACAGAA GACTGATAAT
GGCAAGACCA CAACTGTGTA TGAGTATAAT CCTGTAGTTA AGCCAAAGAA TATTGATCTT
TCTTCTGCAA TTAAGAAGAA TGTTGATAAA TCTCACATTT TTGCTGGTGT AAAAGATAAA
ATTTACTACA CAATTACCGC AAAGGTGAAC AAGACTAAGA TTGACAAGGA TTTGACTGAG
AAGAATCTCA AGGATTACGC TGTGTTCGAT GATGCTCCAA CCTCAGCGTT TACAGAACCT
AATAATCAGG GACTTGATGC TGCTGTGCAG TCTGTAAAGT TCGGTACAGG TAGTGATTCT
ACCCTTACTA AGGGTGAGAA CAACGACTAC ACCGTTACTG CAAAGGCTAA TTCTGATAAT
GCTGAGATTG CTACAGCTGG AGATACTAAA GGTCTTGCTG CTGGTCACAC TCGCATTCTT
GTGAAGTTCA CTGAAGCAGG TTTGAAGAAA ATTGCTTCTA AGTTGAATAA CGTTGCTGCT
GGATCTGAGG CTCCTCAAGT TGAGGTTGAG CTTGCGTTTG ACATAAGTAA AGCCTTCAAG
GATTCTACTA CAGATAAGAC TATTACTAAT AAGTCTGGCT TCTTCCCAGC TCATGATGAG
GGTACTACTG CACCGAATCC TATAATTCCT AATGTTGATG GCAGTAAGCC TACAGTCAAG
TTTGGTTATT TGCAGGTTGA TAAGTACAAT TCTGAAGATG AGAGTAAAAA GCTTTCTGGT
GCTGAATTCA AGATATTTAC CGACAAAGGT AAAGCAGATT TGTGCACCAA GTCTCTTAAG
GAAAATACAG CAGTAGATGC GAAAGATAGT CCTTGCAAGG CCGCTTCTGC ATTTGATGAA
ACTACTGTTG AAGGCGGTAA ATTCTCTAAT CCTTACAAGG CTGAAGCTGG TTCAACGCTG
TACGTTGTTG AGGTTAAGGC TCCTGAAGGA TTTGCTTTGT CTCCTGTGGT TAAGGAAATA
ACTGTTAAGG ATACAACTAC CAACGATAAT CCTGATACTT TGAAATTCCC TAACATTCCA
TTGCATGGTG AAAAAGGCGG TAACAAGTTC TGGTTCAATC TTCCTGCAAC TGGTGCTGCT
GGCGTGATTC TGTTTGCGCT TGCTGGCATG GGCTTGATTG CAGCAAGCGT GTTCCTCTAC
ATGCGCAATC GCAAAGAAGA GGAACAGCAG CAGAACGCTT GA
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| Protein sequence | MKKFTNKFVA AVASLAMAGT LCVAGAVTVS SVAWANKPGV SQPSVNKGSK APWESKAPTT
GSLTIVKCRK KDVSTTTTTV ASSSTANASA SNETGKTQDT SCPAGFESLK DVSFTVTKVA
SIKEGTNDVT LNLAQYDSWQ KIAGIVSKLN AHPEEAGVVT LGTGTDVHNM TATDKDGKST
LNNLSVGLYK IVEKVPDGYG AYDFSSFYMT LPLIEQKTDN GKTTTVYEYN PVVKPKNIDL
SSAIKKNVDK SHIFAGVKDK IYYTITAKVN KTKIDKDLTE KNLKDYAVFD DAPTSAFTEP
NNQGLDAAVQ SVKFGTGSDS TLTKGENNDY TVTAKANSDN AEIATAGDTK GLAAGHTRIL
VKFTEAGLKK IASKLNNVAA GSEAPQVEVE LAFDISKAFK DSTTDKTITN KSGFFPAHDE
GTTAPNPIIP NVDGSKPTVK FGYLQVDKYN SEDESKKLSG AEFKIFTDKG KADLCTKSLK
ENTAVDAKDS PCKAASAFDE TTVEGGKFSN PYKAEAGSTL YVVEVKAPEG FALSPVVKEI
TVKDTTTNDN PDTLKFPNIP LHGEKGGNKF WFNLPATGAA GVILFALAGM GLIAASVFLY
MRNRKEEEQQ QNA
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