Gene HMPREF0424_1213 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1213 
Symbol 
ID8709683 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp1440069 
End bp1441436 
Gene Length1368 bp 
Protein Length455 aa 
Translation table11 
GC content35% 
IMG OID646483301 
Producthypothetical protein 
Protein accessionYP_003374407 
Protein GI283783653 
COG category[R] General function prediction only 
COG ID[COG1373] Predicted ATPase (AAA+ superfamily) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000000707521 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGTTAAGGC GAAAATTTTA TCAAAAAATG CTCGATTGGA AGAATGCTGA TCGCGGTTCA 
ACAGCGCTTT TAGTAACAGG TGCTCGAAGA GTTGGGAAAA GTACTATAGT TGAAGAGTTT
GCAAGAAACG AATACAAGTC TTATATTCTT ATTAATTTTT CGCAAGCATC AAAAGATGCG
CTTCGGCTAT TTGAAGATTA TCGTTCAGAT TTAAGCACTT TCTTTACATA CATATCTGCA
CTATATGGTG TGAAACTTTA TAACCGTGAA TCGGTAATGG TTTTTGACGA AGTGCAATTT
TTCCCACAGG CTAGAGAATT TGTAAAACAA CTAGTTGCAG ATGGCAGATA CGACTATATA
GAGACTGGCT CGTTATTGTC TATTAAACAC AATGTTGAAA CAATATTGAT TCCATCTGAA
GAACAAGAAG AACGCATGTA TCCTCTTGAT TTTGAAGAAT TTTTGTGGGC TTTTGGAGAA
GAAAATCTAT CGAAAGTTAT TAAAGATTCA TTTGATGAGT TAAATCCTTT GCCAGATGTT
TTACATAAAA AAGCGATGCG ACTTTTTAGA GAATATATGC TAGTTGGTGG CATGCCGCAG
TCTGTAAATG AATATGTTGA TTCGAGAGAT TTTGCTCGAG TAGATAGGGT TAAGCGTCGT
ATTCTTTCGC TCTATAGGCA GGATGCTGCA AAGTTTGCAA AAGGTTATGA AATGAAAGTT
ATGTCTGTGT TTGATGGAAT ACCAGCACAG CTTTCCAGAC ATGAAAAAAG ATATAGGATT
ACTTCCTTAG GTAAGAATGC TCGTATGCGT GACTATAAGG ATGCGTTTTT TTGGCTTTCG
GATGCGAGTA TTACAAATAA TTGCTACAAA TCTACAGATC CAAATGTGGG ATTGAATCTT
AATGCAGATG ATGCGTTAGT AAAATGTTAT ATGGCTGATA CCGGTTTGTT GACTTCTATG
ATACTTTCAG ATAGTAGTAT TGCGTCTAAT GATCTGTATA AAGAAATTTT ATTTGGAAAA
ATCTCAATTA ATGAAGGAAT GCTAGTTGAA AACGTTGTTG CGCAACAGCT AATAGCATCT
GGACATCGCC TATTCTTCTA TTCAAATAGA GACAAAGAAA ATTCGGAAAA TACTATGGAA
ATAGATTTTT TGATTTCTAA AGCTTTTCAG GATTCTGCTG GCAAAATGCG TATATCTCCT
ATTGAAGTTA AATCTGGGAA TGTGTTTAAA ACAGTTTCTC TTGATAAATT TAAGAACAAG
TTTTCAAAAA GAATTGGAAC TAGTTATGTA TTTGCTCCTA AACAGCTTAG CGTTAGAAAA
GATTTGAATC TCGTAATATT ACCACTTTAT ATGTGTGGAT TGGTGTAG
 
Protein sequence
MLRRKFYQKM LDWKNADRGS TALLVTGARR VGKSTIVEEF ARNEYKSYIL INFSQASKDA 
LRLFEDYRSD LSTFFTYISA LYGVKLYNRE SVMVFDEVQF FPQAREFVKQ LVADGRYDYI
ETGSLLSIKH NVETILIPSE EQEERMYPLD FEEFLWAFGE ENLSKVIKDS FDELNPLPDV
LHKKAMRLFR EYMLVGGMPQ SVNEYVDSRD FARVDRVKRR ILSLYRQDAA KFAKGYEMKV
MSVFDGIPAQ LSRHEKRYRI TSLGKNARMR DYKDAFFWLS DASITNNCYK STDPNVGLNL
NADDALVKCY MADTGLLTSM ILSDSSIASN DLYKEILFGK ISINEGMLVE NVVAQQLIAS
GHRLFFYSNR DKENSENTME IDFLISKAFQ DSAGKMRISP IEVKSGNVFK TVSLDKFKNK
FSKRIGTSYV FAPKQLSVRK DLNLVILPLY MCGLV