| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1209 |
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| Symbol | rplA |
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| ID | 8709767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1436279 |
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| End bp | 1436974 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 646483297 |
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| Product | ribosomal protein L1 |
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| Protein accession | YP_003374403 |
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| Protein GI | 283783649 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000136712 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTAAGC GTTCTAAGAA GTATCGTGAA GCGGCTGAGA AGATCGACCG CAATAACCTG
TACACCCCAG CTGAAGCAAT TGCTTTGTTG CAGAGCATGC CAAAGCACGC TTTCGACGAG
TCCGTTGAGG CTGTTATGCG CCTTAATGTG GATCCTCGCA AGGCTGATCA GTTGGTTCGT
GGCGTTGTGA ACTTGCCAAA CGGCACCGGT AAAACCGCTA AGGTTTTGGT GTTTGCTCGT
GGCCCAAAGG CTACTGAGGC TCAGGAAGCT GGCGCCGACA TCGTTGGTGA TGACGAATTG
ATCGAAAAGG TTGCCGGTGG CTTCCTTGAC TTCGATGCAG TTGTTGCAAC CCCAGACATG
ATGGGTAAGG TTGGTCGCTT GGGTCGTGTT CTCGGTCCTC GTAGCTTGAT GCCAAACCCA
AAGACTGGCA CCGTGACTAT GGATGTAGCC AAGGCTGTTG CTGATATTAA GGGCGGTAAG
ATTGAGTTCC GCGTGGATCG CCAGGGCAAC CTGTCCTTCC TCTTCGGCAA GCTCTCCTTC
GATGCTAAGG CTCTTGAAGA GAACTTCAAG GCTGTCGCAG ACGAAATCCG CCGCTTGAAG
CCAAGCACCA TCAAGGGTCG TTACATTACT AAGGTAACTG TGACTTCTAC GATGGCTCCT
GGTGTTCCAG TGGATATTGC AAGCATCGCT GCCTGA
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| Protein sequence | MAKRSKKYRE AAEKIDRNNL YTPAEAIALL QSMPKHAFDE SVEAVMRLNV DPRKADQLVR
GVVNLPNGTG KTAKVLVFAR GPKATEAQEA GADIVGDDEL IEKVAGGFLD FDAVVATPDM
MGKVGRLGRV LGPRSLMPNP KTGTVTMDVA KAVADIKGGK IEFRVDRQGN LSFLFGKLSF
DAKALEENFK AVADEIRRLK PSTIKGRYIT KVTVTSTMAP GVPVDIASIA A
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