Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1199 |
Symbol | |
ID | 8709227 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1424125 |
End bp | 1426038 |
Gene Length | 1914 bp |
Protein Length | 637 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 646483288 |
Product | carbamoyl-phosphate synthase L chain, ATP binding domain protein |
Protein accession | YP_003374394 |
Protein GI | 283783640 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00000920632 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGTTACGA ATATCAAAAA AATCCTCATC GCAAACCGCG GTGAAATTGC CTTGCGAGTT ATTCGCACGG CTCACGAAAT GGGCATTTCT ACCGTTGCTA TTTACGCACC GACTGATCGC AACGCGCAGT TTGTAGAAAT GGCAGACGAA GCGTACGCAC TTTCCGGAGA CACATATCGC GATACTTATT TAAACGAAGA TGCGATTCTT GACATTATTA AAAGAAGCGG CACGGATGCT GTGCACCCTG GCTATGGTTT CCTTTCGGAA GTTGCGTCTT TTGCTAAGAA GGTCAACGAT GCTGGGGTTA TTTGGATTGG TCCGCGCCCG GAAGCGCTTA TTGATTTGGG AGATAAGATT ACGGCTCGCC GCGTGGCTGT TCGCGCGAAA GTGCCGCCAG TTCCAGGAAT TTCGGAGCCT GTGAAAGATA TTCGAGAACT TTTAACTTTT GCGCAAACTC ACGGCTATCC AGTGATGATG AAGCGCACGG ATGGCGGCGG CGGACGCGGC ATTACAGTCG TTCGTAACGA CGACGAGTTG CGCGGCTTTT ACATGAATCA CGACGCTTTG CAGGGCGGCG ACTTAGACGA ATATTTTATT GAGCGTTTTA TTGACAAGGC TCGCCACGTT GAAACACAGT GCGGCCGCGA CGCTCACGGA AATTTCACCG TATATTCCAC GCGCGATTGC TCGGTGCAGC GCCGAAACCA AAAGCTGGTT GAGGAAGCTC CTGCACCGTT CTTGACTGAC GATGAAAAAG ATCAGCTTTA CCGATATTCT CGTAACCTAT TTGAAGCTGT TGACTACGTT GGTCTTGGCA CGTGCGAATA TATGGTGACT TCTCAGCATA AAGTCTACTT CTTGGAAGTT AATCCGCGAT TGCAAGTTGA GCACACGGTT AGTGAGGAAG TTAGTGGACT TGATTTAGTG CGAGAACAGC TCAATATTGC TGACGGCGGC GAGTTGATTA AGGATCCAGA GCCTCGCGGA CACAGCTTCG AGCTTCGCAT TACTTCGGAA GATCCTGCTA CGAATTTGAC TCCAAGTTCC GGCACTTTGA CGAAAATAAA GTGGCCTTCC GGTCCTGGTA TTCGCGTCGA TTTTGGCGTT GAAGTTGGCG ATAATATTTC GCCAAAATTC GATTCGATGA TGGGCAAGCT TATTATTACT GCGCAAAGTC GCGAAACTGC TGTTGCTCGC GTGCGTCGCG CTTTGAAGGA ACTTTGTATT GAGGGCGTGC CAACTCCTGC GAAACTTTTT GAGCAGATTT TTAACGACCC TGAGTTTACT GCGGAAAATC ACAGTTTTGA TGTGTCTACT AAGTGGATGG AACGCAAGTA TTTGAACCGC GTTCCTGCAG CTTCTTTGGG CGGTCAGCCG GCTTCGCTTG TTTCTGGAAA GTCTGCGGAT GAATCCGAAA ATAAGCAGCC TGCAATGGAA TCCTTCATTA TTGAGGTTGA TAATAAGCGC GTAAAGCTTA CGATTCCGCA AGATATTGTT GACAATTTGA CCGGCTCTGC GCGAGTTCGT AGCGTTTCTA GAGCTTCGCA GCCTTTGCGT GGACGTTCGC TTCGCGGAAG TACTCACAAA TCTGAAGAAC AAAAGCAGAT TCCTGGCGTA ATCGCAGCAC CTATGCAAGC TGTTATTACG CGCGTGAATG TGGCTGAAGG TCAGCAGGTT GCCAAGGGTG ATTTGCTTGT GGTGCTTGAG TCTATGAAAA TGGAAAATTA CGTTTACGCT CCTGCAGCTG GTACTGTTAC TGGAATTTTT GTGGGTCCTG GTGACGGCGT GGAATCGGGT GCAAAGCTTG TGACGATTGA TCTTGCTGGA GATAAAAGCG CGGATAAGAG CGCAGATAAG TCTTCTGAAT CTTCTGAAAA GTCTTCTGAA AAGCCGGAAG GAGAGCAGAA ATGA
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Protein sequence | MVTNIKKILI ANRGEIALRV IRTAHEMGIS TVAIYAPTDR NAQFVEMADE AYALSGDTYR DTYLNEDAIL DIIKRSGTDA VHPGYGFLSE VASFAKKVND AGVIWIGPRP EALIDLGDKI TARRVAVRAK VPPVPGISEP VKDIRELLTF AQTHGYPVMM KRTDGGGGRG ITVVRNDDEL RGFYMNHDAL QGGDLDEYFI ERFIDKARHV ETQCGRDAHG NFTVYSTRDC SVQRRNQKLV EEAPAPFLTD DEKDQLYRYS RNLFEAVDYV GLGTCEYMVT SQHKVYFLEV NPRLQVEHTV SEEVSGLDLV REQLNIADGG ELIKDPEPRG HSFELRITSE DPATNLTPSS GTLTKIKWPS GPGIRVDFGV EVGDNISPKF DSMMGKLIIT AQSRETAVAR VRRALKELCI EGVPTPAKLF EQIFNDPEFT AENHSFDVST KWMERKYLNR VPAASLGGQP ASLVSGKSAD ESENKQPAME SFIIEVDNKR VKLTIPQDIV DNLTGSARVR SVSRASQPLR GRSLRGSTHK SEEQKQIPGV IAAPMQAVIT RVNVAEGQQV AKGDLLVVLE SMKMENYVYA PAAGTVTGIF VGPGDGVESG AKLVTIDLAG DKSADKSADK SSESSEKSSE KPEGEQK
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