Gene HMPREF0424_1194 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1194 
Symbol 
ID8710070 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1401679 
End bp1402161 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content44% 
IMG OID646483283 
Productphosphopantethiene--protein transferase domain protein 
Protein accessionYP_003374389 
Protein GI283783635 
COG category[I] Lipid transport and metabolism 
COG ID[COG0736] Phosphopantetheinyl transferase (holo-ACP synthase) 
TIGRFAM ID[TIGR00556] phosphopantethiene--protein transferase domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGCAG GAATAGGGCA CGACTTGGTA AACGTTGCGC AGTTTGCTGA ACAGATGCAG 
GATGGCAATG GTTGGCGTGC GCTGTTTTCT GTGCGAGAGC TTCGACAATG TGATCTTCGT 
GCGCAAGTGA AGAATGATGA GAGAGCTTTA CATATTGCAG CACGCTGGGC TGGCAAAGAA 
GCTGTGATTA AAGCGTGGTC CGAGGCGTTA TGCACAATAA ATAACCCTTA TCCATATACT 
CTGGATAACA TGCCATGGGC GAGTATTGAG ATTCTTAACG ATTCCCATGG TTGCCCACGC 
ATTATTCTCA GCTCAGATGT GCATTCGCAA CTTGTAAAAT CGCTTTTCAG TGCGTCCAGC 
GAGTGTGTAG ATAGTAGTGA GCACATAGAT AATATTCGTT GGCATATTTC GCTTAGTCAT 
GACGGATTAT TAGACGATAA TTCAGCTTTT GCATCAGCTG TTGTAATGCT TGAAGTCTTA 
TAA
 
Protein sequence
MIAGIGHDLV NVAQFAEQMQ DGNGWRALFS VRELRQCDLR AQVKNDERAL HIAARWAGKE 
AVIKAWSEAL CTINNPYPYT LDNMPWASIE ILNDSHGCPR IILSSDVHSQ LVKSLFSASS 
ECVDSSEHID NIRWHISLSH DGLLDDNSAF ASAVVMLEVL