Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1188 |
Symbol | |
ID | 8709295 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1393954 |
End bp | 1395813 |
Gene Length | 1860 bp |
Protein Length | 619 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 646483278 |
Product | phosphotransferase enzyme family protein |
Protein accession | YP_003374385 |
Protein GI | 283783631 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4750] CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGCAT ATTCAGTATT AACTCATAAC GAATTTGCTG TAATATCAGC ATTGCAACGT TTGCCAGGAA GTAATCAACG TACTATAGCT GAGCATACGA AGCTTTCATT AGGCACAGTA AATAGTGCGT TACGCGATGC TATTCAGCAT GGGTTTGTTG TTAATGGTGA AGTTACATCA AAAGGTCTTA CCGCACTCGA ACCGCATCGC GTCCACAATG CGGTGATCAT GGCAGCTGGC CTTTCCTCCC GCTTTTCCCC GATTTCTTAC GAATTGCCAA AAGGTTTACT CACTGTGCGC GGCGAAGTGC TTATTGAACG ACAAATTCGT CAATTACAAG CGGCAGGAAT TAAAGATATT AGCGTGGTGG TTGGCTACAA GCAGGAACGT TTCTTCTATT TGGAAGACAA GTTTACTAAA GGCGATTTTT GCGTAAAAAT CGTGCCAAAT AAGGAATATC GTGAGCGTAA CAACAACAGT TCAATCATGG CTGTTGCTCA CCTTTTAAGT AACACGTATA TTTGTTCTTC TGACAATTAT TTCGACGAAA ATCCTTTTGA ACCATACGTG TGGAAGGCTT ACTATTCTGC GCAATATCAG CGGGGCCGCA CTAAAGAGTG GTGTATGAGT GTAGGTGCGC ACGATCGCAT TACTTCGGTA ACTATTGGTG GCAGTGATGC GTGGTACATG ATTGGTCACG TGTATTTTGA CAGCGAATTT TCGGCTAAGT TTGTGCGAAT TTTGCGTGCG GAATATGATT TGCCGCAGAC TGCTGGCAAG TTGTGGGAAG ACATTTTGAT TGAGCATTTA GACGAGCTTG ATATGCGCAT GCGCCGCTAC GATGCGCCGA TTATTCACGA GTTCGATTCG TTAGATGAGC TTCGCGAGTT TGATCCGCTG TTTTTGGAAA ATGTTGACAG TGAAGTTTTT GACCGCATCG TTAAGGTGCT TGGTTGCAAA AAGTCGGATA TTCGCGACGT TTACCCGTTG AAAAATGGTT TGACGAATCT TTCTTGCCAT TTTATGGTTG GTTCTAACGA GTATGTGTAC CGTCATCCGG GGGTTGGCAC GGATGTGTTG GTGAATCGCC AGGCTGAGGA TGAGGCTTTG CGTGCGGCGC AGCACCTTGG TTTGGACGGT ACGTTGGTTG CAGATGATCC GAAGTGCGGC TGGAAAATTT CGCATTTTTT GAAAGACTGT CGTATTGCTG ATTTTCATGA TTCTTGCGAT TTGCGCGAAG GTATGCGTCT GATTCGTAAG CTTCACAACA GTGGTGCTAC GGTGAGTAGA TGCTTCGATT TTTATGAGGA ATCTCAGCGT TATTTGCGCG ATTTGCGCGC TCGCCGTGTT GCGTTGCCTG AGGGTGCTGA CGCTTTGCTT CATAAGGTTG ATTATTTGCA TGAGTGCGTG AGTAAAGATG CTTGTCAAAA AATTTGCTTG GCGCACAACG ATATATTGGG TGCGAATGTG CTTGTGGATG TTGCTGGACG CTACCATCTG ATTGATTGGG AGTATGCGGG GATGTCGGAT TATGCGCAGG ATTTGGGTAC GTTGTGCGTG TCTGACGCGC TTAATGAGCA GGAATTTGAC GCGGTTCTAG CGGAGTATTT TGAGCGCAAT CCTACTTGTG CTGAGCGTCG TCATTGCATG GCGTACGTTG GTTTTGCGGG GTGGTGTTGG TATTTGTGGT CGTTGGTAAA AGAGGCTGAG GGGGAGCCTG TAGGTGACTG TCGTTATTTG TATTACCGTT ATGCGAAACG TTATGTTGAC CGCGCTTCGA GCGAATATGG TGCCGTATCC GCTGAATCCT CTGAATCTGC TGGTTGTGAC GGGTCTGCAG GCTCTGTGGC AAAGGTGTGA
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Protein sequence | MEAYSVLTHN EFAVISALQR LPGSNQRTIA EHTKLSLGTV NSALRDAIQH GFVVNGEVTS KGLTALEPHR VHNAVIMAAG LSSRFSPISY ELPKGLLTVR GEVLIERQIR QLQAAGIKDI SVVVGYKQER FFYLEDKFTK GDFCVKIVPN KEYRERNNNS SIMAVAHLLS NTYICSSDNY FDENPFEPYV WKAYYSAQYQ RGRTKEWCMS VGAHDRITSV TIGGSDAWYM IGHVYFDSEF SAKFVRILRA EYDLPQTAGK LWEDILIEHL DELDMRMRRY DAPIIHEFDS LDELREFDPL FLENVDSEVF DRIVKVLGCK KSDIRDVYPL KNGLTNLSCH FMVGSNEYVY RHPGVGTDVL VNRQAEDEAL RAAQHLGLDG TLVADDPKCG WKISHFLKDC RIADFHDSCD LREGMRLIRK LHNSGATVSR CFDFYEESQR YLRDLRARRV ALPEGADALL HKVDYLHECV SKDACQKICL AHNDILGANV LVDVAGRYHL IDWEYAGMSD YAQDLGTLCV SDALNEQEFD AVLAEYFERN PTCAERRHCM AYVGFAGWCW YLWSLVKEAE GEPVGDCRYL YYRYAKRYVD RASSEYGAVS AESSESAGCD GSAGSVAKV
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