Gene HMPREF0424_1188 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1188 
Symbol 
ID8709295 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp1393954 
End bp1395813 
Gene Length1860 bp 
Protein Length619 aa 
Translation table11 
GC content46% 
IMG OID646483278 
Productphosphotransferase enzyme family protein 
Protein accessionYP_003374385 
Protein GI283783631 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4750] CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGCAT ATTCAGTATT AACTCATAAC GAATTTGCTG TAATATCAGC ATTGCAACGT 
TTGCCAGGAA GTAATCAACG TACTATAGCT GAGCATACGA AGCTTTCATT AGGCACAGTA
AATAGTGCGT TACGCGATGC TATTCAGCAT GGGTTTGTTG TTAATGGTGA AGTTACATCA
AAAGGTCTTA CCGCACTCGA ACCGCATCGC GTCCACAATG CGGTGATCAT GGCAGCTGGC
CTTTCCTCCC GCTTTTCCCC GATTTCTTAC GAATTGCCAA AAGGTTTACT CACTGTGCGC
GGCGAAGTGC TTATTGAACG ACAAATTCGT CAATTACAAG CGGCAGGAAT TAAAGATATT
AGCGTGGTGG TTGGCTACAA GCAGGAACGT TTCTTCTATT TGGAAGACAA GTTTACTAAA
GGCGATTTTT GCGTAAAAAT CGTGCCAAAT AAGGAATATC GTGAGCGTAA CAACAACAGT
TCAATCATGG CTGTTGCTCA CCTTTTAAGT AACACGTATA TTTGTTCTTC TGACAATTAT
TTCGACGAAA ATCCTTTTGA ACCATACGTG TGGAAGGCTT ACTATTCTGC GCAATATCAG
CGGGGCCGCA CTAAAGAGTG GTGTATGAGT GTAGGTGCGC ACGATCGCAT TACTTCGGTA
ACTATTGGTG GCAGTGATGC GTGGTACATG ATTGGTCACG TGTATTTTGA CAGCGAATTT
TCGGCTAAGT TTGTGCGAAT TTTGCGTGCG GAATATGATT TGCCGCAGAC TGCTGGCAAG
TTGTGGGAAG ACATTTTGAT TGAGCATTTA GACGAGCTTG ATATGCGCAT GCGCCGCTAC
GATGCGCCGA TTATTCACGA GTTCGATTCG TTAGATGAGC TTCGCGAGTT TGATCCGCTG
TTTTTGGAAA ATGTTGACAG TGAAGTTTTT GACCGCATCG TTAAGGTGCT TGGTTGCAAA
AAGTCGGATA TTCGCGACGT TTACCCGTTG AAAAATGGTT TGACGAATCT TTCTTGCCAT
TTTATGGTTG GTTCTAACGA GTATGTGTAC CGTCATCCGG GGGTTGGCAC GGATGTGTTG
GTGAATCGCC AGGCTGAGGA TGAGGCTTTG CGTGCGGCGC AGCACCTTGG TTTGGACGGT
ACGTTGGTTG CAGATGATCC GAAGTGCGGC TGGAAAATTT CGCATTTTTT GAAAGACTGT
CGTATTGCTG ATTTTCATGA TTCTTGCGAT TTGCGCGAAG GTATGCGTCT GATTCGTAAG
CTTCACAACA GTGGTGCTAC GGTGAGTAGA TGCTTCGATT TTTATGAGGA ATCTCAGCGT
TATTTGCGCG ATTTGCGCGC TCGCCGTGTT GCGTTGCCTG AGGGTGCTGA CGCTTTGCTT
CATAAGGTTG ATTATTTGCA TGAGTGCGTG AGTAAAGATG CTTGTCAAAA AATTTGCTTG
GCGCACAACG ATATATTGGG TGCGAATGTG CTTGTGGATG TTGCTGGACG CTACCATCTG
ATTGATTGGG AGTATGCGGG GATGTCGGAT TATGCGCAGG ATTTGGGTAC GTTGTGCGTG
TCTGACGCGC TTAATGAGCA GGAATTTGAC GCGGTTCTAG CGGAGTATTT TGAGCGCAAT
CCTACTTGTG CTGAGCGTCG TCATTGCATG GCGTACGTTG GTTTTGCGGG GTGGTGTTGG
TATTTGTGGT CGTTGGTAAA AGAGGCTGAG GGGGAGCCTG TAGGTGACTG TCGTTATTTG
TATTACCGTT ATGCGAAACG TTATGTTGAC CGCGCTTCGA GCGAATATGG TGCCGTATCC
GCTGAATCCT CTGAATCTGC TGGTTGTGAC GGGTCTGCAG GCTCTGTGGC AAAGGTGTGA
 
Protein sequence
MEAYSVLTHN EFAVISALQR LPGSNQRTIA EHTKLSLGTV NSALRDAIQH GFVVNGEVTS 
KGLTALEPHR VHNAVIMAAG LSSRFSPISY ELPKGLLTVR GEVLIERQIR QLQAAGIKDI
SVVVGYKQER FFYLEDKFTK GDFCVKIVPN KEYRERNNNS SIMAVAHLLS NTYICSSDNY
FDENPFEPYV WKAYYSAQYQ RGRTKEWCMS VGAHDRITSV TIGGSDAWYM IGHVYFDSEF
SAKFVRILRA EYDLPQTAGK LWEDILIEHL DELDMRMRRY DAPIIHEFDS LDELREFDPL
FLENVDSEVF DRIVKVLGCK KSDIRDVYPL KNGLTNLSCH FMVGSNEYVY RHPGVGTDVL
VNRQAEDEAL RAAQHLGLDG TLVADDPKCG WKISHFLKDC RIADFHDSCD LREGMRLIRK
LHNSGATVSR CFDFYEESQR YLRDLRARRV ALPEGADALL HKVDYLHECV SKDACQKICL
AHNDILGANV LVDVAGRYHL IDWEYAGMSD YAQDLGTLCV SDALNEQEFD AVLAEYFERN
PTCAERRHCM AYVGFAGWCW YLWSLVKEAE GEPVGDCRYL YYRYAKRYVD RASSEYGAVS
AESSESAGCD GSAGSVAKV