| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1183 |
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| Symbol | |
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| ID | 8708898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1387167 |
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| End bp | 1388012 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646483273 |
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| Product | ABC-2 type transporter |
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| Protein accession | YP_003374380 |
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| Protein GI | 283783626 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAAAACA TTGTAGATAA GTTGCGCGCA AGATACCACT ATTCGTGGGT GGTTCTTAAA
GAGCTGGTGA AAACTGATTT CAAATTGCGC TACCAAGGGT CTTTCTTGGG AGTTGCGTGG
TCGGTTTTAC GACCGCTTAT GCTGTTTTGC GTAATGTATG CAGTGTTTGC AAAGTTTTTG
CGAATGTCGG ATGGCACGCC CACCTATCCA GTTGTGCTTT TGCTTGGCAT TAGCGCATGG
CAGTTCTTTG GCGAGGCTAC TTCGATTGGT TTGCGTGCGG TGGTAGACCG TGGAGATTTG
CTGCGTAAAA TCCATTTTCC TAACTATATT GTGGTGGTTT CGGCAACTGT TGGCGCGTTA
ATCAGTTTTG CAATAAATCT TGTGGTAGTA ATCATTTTCG CCATCTGCTC AGGCGTGCAA
TTTACGTGGT GGGTGCTATT AGTTCCTTTG AATTGTATAC AGTTGTACGC ATTAGCATTA
GGCGTAACGC TGCTGCTAGC AACTATGTAC GTGTATTTTC GCGACATTGC GCACTTGTGG
GACGTGGTGC AACAAGTACT GTTTTACGCA ATGCCAATCA TTTACCCTCT AAGCATGGTG
ATTGGTAATA ATTCTTTAGG AAGATGGGGA ACGGTTATTG CAAAAGTGCA GTTACTTAAC
CCTATTGCAC AATGTATTCA AGATTTGCGC CACAATCTTG TAGCACCTCT TACTCAGCCT
ACTGTGTGGA ATTTAGTAGG GTCTCCTTTG CTGATGATGG TTCCGGTAGT ATTAACCGTA
ATCTTGTGTG TGCTCGGCGT CGCAGTGTTC CGCAAGTGCA ATCGTAAGTT TGCTGAGGTG
ATGTAA
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| Protein sequence | MKNIVDKLRA RYHYSWVVLK ELVKTDFKLR YQGSFLGVAW SVLRPLMLFC VMYAVFAKFL
RMSDGTPTYP VVLLLGISAW QFFGEATSIG LRAVVDRGDL LRKIHFPNYI VVVSATVGAL
ISFAINLVVV IIFAICSGVQ FTWWVLLVPL NCIQLYALAL GVTLLLATMY VYFRDIAHLW
DVVQQVLFYA MPIIYPLSMV IGNNSLGRWG TVIAKVQLLN PIAQCIQDLR HNLVAPLTQP
TVWNLVGSPL LMMVPVVLTV ILCVLGVAVF RKCNRKFAEV M
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