| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1181 |
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| Symbol | |
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| ID | 8709023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1384114 |
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| End bp | 1385853 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 646483271 |
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| Product | glycosyltransferase, group 1 family protein |
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| Protein accession | YP_003374378 |
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| Protein GI | 283783624 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0438] Glycosyltransferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTCT TTAATCTAGA TGTTAATGCA AAAGCTTATA TAGACTCTTT AAGCGAGCGT
CAACGCAGGC TTATTGTGGG TGCTATAAAT TATCATTCCC TAACAGCTCC ATCTAGAACT
TTGCAATATC AAGTTTACAT GGGTCAAAAA TGGCAGTATC CGCGATTGGC TGATTTTTCA
GTTTTTGACG GTGCTTGTAC AAAAAACGAA GGATTAAAAC CAATCGCAAC TTTTAGTGCA
CGATCAACTG TTAAAACTAA TAGCGAATAC ACAAAAGAAT TTTGGAATGA AGGCAAACTG
TTTAAAGATA ATGGCGTTAG GTATTTGTTG CTGACACCAG ATGATGCAAC CGACGATGAT
GTGATGTCTC ACTGGGCTTC TGATACGTTA AAGCAGCACA TTTACAAAGA GTGTGAATTG
CACGCCCCTT CTATGTTTGA TGTTGTTAGG GAAGTAATGC GCAAAAAACG CGAGTGTGAT
TCGAAGAAAC CTGTTGAAGA GTATTGTCCT TGGAATAAAA AGAAGTTTTA TTATGTTGCA
AATGCTCACC AAAGAGAAAT TGCAAAACAA GAAAATTGGG ATTTATCAAA TATAAAAGAT
GCTAGATTGG ACTGTGTTTC TCCTGCTAAA AGAGTTGAAG GAGCTAAAAA AGCTATTATT
ATAGGTTTGC ATTGGCTGCA AGCTGGTGGT GCAGAAAGAT GGGCTGTAGA AACAATAAAA
CTTGCCAAAA AAGCTGGTTT TGTGCCAATT GTTATCACAG ATAGAGACGG TCACCAGCCG
TGGATTACGA AAGATTTCTG TGATGATGCT CTTGTGTTAC CACTTACTCC ACCAATTAGA
GAATATTGGG CGGATGTTCC ACTTTTAAGA TCTTTGTTTG AGCAATTTGA GATTAAAGCA
ATAGCAATAC ACCATTGCCA ATGGCTTTAC GACCATATTT GGTGGGTTAA ACAATTCTTC
CCAGAAACAC ATATTATTGA TTCGCTGCAT ATTGTTGAAT ACATAAATTG TGGAGGATAT
CCGCATGAAG CTGTAACACA CGATAAGTGG ATTGATTTGC ACCATGTTAT TTCTCCACAA
CTTGAAAATT GGTTGCATGA TGTGCATGGT ATTGAATCTT CCAAGATTGT TGACGCTCCA
CTTATTGGTC TTACTGCTGG AATTGGAAAC GATTGCGTAT CGCCGAGAAA AAATAAAAAT
GTTCTGAATG TTGCTTTTGT TGGAAGGATT GCAAGACAAA AACGTCCAGA AGCGTTTGTT
CTTGTTGCAA AAGCTTTAAA CAAAAAATAT CCAGGGAAAT TCCACTTTAT TTTGCATGGA
GATGGCGAAT TAGACACATT TGTTTCAGAA CTTATATCTA GGTATGGTCT TGAAAACGTT
ATTGAGCGCA GATCTATGAA AATTCCAGCT CAAAAAACGT ATGATGATGC GGACGTGCTA
CTTATTAGCT CTGTAAACGA GGGTATTACG CTTACAACTA TTGAAGCACT TTCTAATGGA
GTTCCAGTAA TTTCATCGGA TGTTGGATCG CAAAAAACTG TTATAGCAAA AAGTGCGTTA
TTGCCAAGAA TGACTTCTAG TTTTGTTAAA GCGTCTGTAA AGGAATTGTT TAATATTATG
GAGAATGATT CATATCGTTC ATTATTGTTA AAAGAAGAAG TTGAAAAATT GCGCAATTTC
GCAAAACTCG AATCTGCAGA AACGTTATTT ACTAAGTTAT TTGAAGAATG GAGCAAGTAA
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| Protein sequence | MNFFNLDVNA KAYIDSLSER QRRLIVGAIN YHSLTAPSRT LQYQVYMGQK WQYPRLADFS
VFDGACTKNE GLKPIATFSA RSTVKTNSEY TKEFWNEGKL FKDNGVRYLL LTPDDATDDD
VMSHWASDTL KQHIYKECEL HAPSMFDVVR EVMRKKRECD SKKPVEEYCP WNKKKFYYVA
NAHQREIAKQ ENWDLSNIKD ARLDCVSPAK RVEGAKKAII IGLHWLQAGG AERWAVETIK
LAKKAGFVPI VITDRDGHQP WITKDFCDDA LVLPLTPPIR EYWADVPLLR SLFEQFEIKA
IAIHHCQWLY DHIWWVKQFF PETHIIDSLH IVEYINCGGY PHEAVTHDKW IDLHHVISPQ
LENWLHDVHG IESSKIVDAP LIGLTAGIGN DCVSPRKNKN VLNVAFVGRI ARQKRPEAFV
LVAKALNKKY PGKFHFILHG DGELDTFVSE LISRYGLENV IERRSMKIPA QKTYDDADVL
LISSVNEGIT LTTIEALSNG VPVISSDVGS QKTVIAKSAL LPRMTSSFVK ASVKELFNIM
ENDSYRSLLL KEEVEKLRNF AKLESAETLF TKLFEEWSK
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