Gene HMPREF0424_1177 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1177 
SymbolrfbB 
ID8708807 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp1380245 
End bp1381336 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content40% 
IMG OID646483267 
ProductdTDP-glucose 4,6-dehydratase 
Protein accessionYP_003374375 
Protein GI283783621 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1088] dTDP-D-glucose 4,6-dehydratase 
TIGRFAM ID[TIGR01181] dTDP-glucose 4,6-dehydratase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.792141 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACAACT ACGCATCAAA CAGTAATATT TTTCAACCAC ACCACATTTT AGTTACTGGC 
GGCGCAGGTT TTATTGGATC TAATTTTGTG CATTACATAG CTAAATATCA TGTAACGGTT 
GCTGTTACGG TACTTGATTT GCTTACTTAC GCTGGGAATA TGGCAAATCT TTACGACTTA 
CCTCAAGATT TTGCAAACAA CCGATACGCT TTTATTCGCG GAGATATTCG AGACGAAAAT 
ATAGTTGATC AGCTATTAGA TCCGCATAAT CCAATTAAAA CTGCAGAAGG AACAACACTT 
CCTGCTATCG ACGCAATCGT AAATTTTGCT GCAGAATCAC ACAACGATAA TGCAATCGAG 
TTTTCTGACC CGTTTATAAG CACAAATATT TTAGGAACGC ATACACTCAT TAAATTCGCA 
CACAAATATA ATATTCGCTT CCATCAAGTA AGCACCGATG AAATTTACGG AGATTTTCCT 
ATTGACAGCG TGCTTAAATT CGACGAGTCA AGTCCATATT GTCCATCTAG TCCATATTCT 
GCAAGCAAAG CTGCAGGCGA TCTCTTGGTA AAAGCATGGT GTAGAACTTA CGGTTTGCGC 
GCAACTATTT CGAATAGCAG CAATAATTAC GGGCCACGAC AGCATATTGA AAAGTTTATT 
CCTCGCCAAA TCACAAATAT TATGTGCAAT ATGCCAGCAA AATTGTACGG CGTAGGAGAT 
TCGATACGCG ATTGGATCCA CGTTGAAGAT AATTGCGACG CAATATGGCA TGTTCTAACG 
CGTGGAACAA TCGGTGAAAC ATATAATATC GGTGCCAACT GTGAAGTTAA CAACATAAAT 
ATTTTGCGGA TTTTGATGCA GTTAATGGGC GTGCCGGAAA CAAATATAGC GTATGTAAAT 
CCCAGAATAG GCGAGGATAG GCGTTACGCA CTAGATACTA CGAAAATTCG AACGCAATTA 
AAATGGGAGC CTAAGTACAA CAATTTGAAG CAAGGCTTGC AAGAAACAAT ATCGTGGTAC 
GGCTCTCACG CTGATTTATG GAAGCCTATT AAAGCGCAAG TCGAGCAGCA TTACGCTGAA 
TTAGGGCACT GA
 
Protein sequence
MHNYASNSNI FQPHHILVTG GAGFIGSNFV HYIAKYHVTV AVTVLDLLTY AGNMANLYDL 
PQDFANNRYA FIRGDIRDEN IVDQLLDPHN PIKTAEGTTL PAIDAIVNFA AESHNDNAIE 
FSDPFISTNI LGTHTLIKFA HKYNIRFHQV STDEIYGDFP IDSVLKFDES SPYCPSSPYS 
ASKAAGDLLV KAWCRTYGLR ATISNSSNNY GPRQHIEKFI PRQITNIMCN MPAKLYGVGD 
SIRDWIHVED NCDAIWHVLT RGTIGETYNI GANCEVNNIN ILRILMQLMG VPETNIAYVN 
PRIGEDRRYA LDTTKIRTQL KWEPKYNNLK QGLQETISWY GSHADLWKPI KAQVEQHYAE 
LGH