| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1169 |
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| Symbol | rpoB |
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| ID | 8709036 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1368600 |
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| End bp | 1372166 |
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| Gene Length | 3567 bp |
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| Protein Length | 1188 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646483259 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_003374367 |
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| Protein GI | 283783613 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0246464 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCTGCTG AACAAGCTAT GACGAGCACC ACGAAAGTCA TCGCACGTGC TGACGAACAT
GATATTAAGT TGCATAAAGC GTCAGATCGT GTGAATTTTG GCTCCATTTG TGAGCCTATT
GATGTGCCAT ACCTCCTCGG CGTGCAAACC GACAGCTTTG ATTGGTTGAT CGGTTCTGAA
CGCTGGAAGA AGCGCGTTGC AGAAGATGAA GCAAACGGAA CTCACACCGT GCCTCATGTT
TCTGGTCTCG ACGAAGTCTT CCAGGAGATT TCCCCAATTG AGAACTTTGC TGAGACAATG
AGTCTCACAT TCTCTGATCC ATACTTTGAA GAGCCACGCC ACACTGTGCT CGAGTGCAAG
GAAAAGGATT ACACCTATTC TGCTCCACTT TATGTGAATG CTGAGTTTGA AAACGGCGAA
ACTGGTGAAA TTAAGAGCCA AACTGTTTTC ATGGGTGATT TTCCACTTCA AACTCCACAC
GGTACTTTTA TTATTGGCGG CACCGAGCGA GTAATTGTTT CGCAGCTTGT GCGCTCTCCA
GGCGTGTATT TTGATCGCAC GCAGGATCGC ACTTCCGACA AGGATGTTTT CGGTGCGAAG
ATTATTCCAA GCCGTGGTGC ATGGCTGGAA TTTGAGATCG ACAAGCGTGA CGTTTTAGGC
GTTCGCGTTG ACCGCAAGCG TAAGCAGTCT GCAATCGTAT TCCTTATGGC TATTGGCATG
ACGAAAGACG AAATTGCCGA TGCTTTCCAA GGATACCCAC TTGTTTTGGA TGCGCTCGCA
AAAGAGCCTA TCGAAACGCA AGACGATGCA CTTACCGATT TGTACCGTAA GATTCGCCCT
GCAGATACTG CAACTCCAGA AGCTGGTCGC AACCTTCTCG ATTCCTTCTA CTTCAACACA
AAGCGTTACG ATTTGGCTCG CGTTGGTCGC TATAAGATCA ACCGCAAGCT CGGTATTGAA
GCAGATTACA GCGATCGTAG CTTGAACCGC GAAGATATTA TCGCAACTAT TAAGTACTTG
GTAACGTTGC ATTCCGGCGA AAAGACCTTC CCAGGTAAGC GCGACGGTCA AGACGTGCAG
TTGCGCGTTG ACGTTGACGA TATCGATCAT TTCGGCAACC GTCGTATTCG TCAGGTTGGC
GAGCTTGTGC AGAATCAGCT TCGTACCGGC TTAAGCCGCA TGGAGCGCGT TGTGCGCGAA
CGTATGACAA CTCAGGATGC AGAGGCAATT ACTCCTCAGT CCTTGATTAA CATTCGTCCA
GTAAACGCAA CTATTAAGGA ATTCTTCGGA ACTTCCCAGC TCAGCCAGTT TATGGATCAA
AACAATCCTT TGGCAGGAGT TACGAACAAG CGTCGTCTTT CCGCACTTGG TCCTGGTGGT
CTTTCTCGCG ATCGCGCTTC TATGGAAGTT CGAGACGTGC ACCCATCCCA CTTCGGACGT
ATGTGCCCAA TCGAATCCCC AGAAGGTCCA AACATCGGTC TTATCGGTTC TTTGGCAACC
TTCGGACGCA TCAACCCATT CGGCTTCATC GAAACCCCAT ACCGCAAGGT TGTGAATGGT
CACGTAACTA ACGAAGTTGA ATACATGACT GCAGACCGCG AAGCCGAGCA CGTTATTGCT
CAAGCAAACC AGGAACTCGA CGAAAACGGC AACTTCGTTG GCACTCAAGC ACTTGCTCGC
GTGGACGAAG AAGAAGCAGT CGATGTGCCT GTAAGCACTG TAGATTACAT GGATGTTTCC
CCACGTCAGA TGGTTTCCCT TGGTGCTTCC TTGATTCCAT TCTTGGAGCA CGATGAAGGT
CACCGCGCAT TGATGGGTAC GAACATGCAG CGTCAGGCTG TGCCGCTTAT TAAGTCGGAG
CGACCACTTG TTGGTACCGG CTCTGAATGG CGTGCAGCAG TTGATTCTGG CGACGTAATC
TTAGCTGAAA AGCCGGGCGT AGTAACTTAC GTTTCTGCAG ATATTATTCG CGTTATGAAC
GACGATGGAA CTCAGTCCAG CTACAAGCTT TCAAAGTTCC AGCGTTCTAA CCAGACTACT
TGCTACAACC AAGTGCCGCT TATTAAAGAT GGCGAGCGTG TTGAAGCTGG TACTGTTTTG
GCAGACGGTC CTGCAACCGA AAAGGGCGAA CTTGCATTGG GTAAGAATTT GCTCGTTGCA
TTCATGCCTT GGAACGGTTA CAACTACGAG GATGCTGTGA TTATTTCCCA GCGTCTTGTG
CAAGATGATA CGCTTTCTTC TATTCATATT GAAGAGTACG AAATCGACGC TCGTGAAACC
AAGCTTGGTT CCGAAGAGAT TACTCGCGAT TTGCCAAACG TTGGTGAAGA TGCGATTGCA
AATCTTGACG AGCGCGGCAT TATTCGCATT GGCGCTGAAG TCGAAGCTGG CGATATTTTG
GTTGGTAAGG TAACTCCTAA GGGCGAAACC GAGCTTACTC CAGAAGAGCG TTTGCTCCGC
GCAATCTTCG GCGAAAAGAG CCGCGAAGTG CGCGATACTT CTTTGCGCGT GCCACACGGT
GAGACTGGTA CTGTGATTGC AGTTAAGGAA ATCACTCGTG AAGACGCTGA AGATGACGGT
GACGAGCTTC CAAACGGCGT GAACCAAATG ATTCGCGTTT ACATTGCTCA GCATCGTAAG
ATTACGCAAG GCGATAAGCT TTCCGGTCGT CACGGCAACA AGGGTGTTAT TTCCCGCATT
TTGCCAGAAG AAGATATGCC ATTCTTGGCT GATGGTACTC CAGTTGACAT CATGCTTAAC
CCGTTGGGCG TGCCTTCTCG AATGAACTTG GGTCAGGTGC TCGAGCTTCA CTTGGGCTGG
ATTGCTCACG CTGGCTGGGA TATTAACTTG GATTCAGATT TGGAAGCAGC TTGGAAGAAG
TACGTGCCGC AAGGTGCTGA GCATGGCGAT CCATGCACTC CAGTTGCAAC ACCAGTATTC
GACGGCGTGC GCCCAGAAAC TTTGAAGGGC TTGCTTTCTA CAACACTCGC AAATCGCGAT
GGTGACAAGC TTGTTGGCTC CGACGGTAAG GCAACCTTAT TCGACGGTCG TACTGGTGAG
CCATTCCCGA AGCCAATTTC TGTGGGCTAC ATGTACATTT TGAAGCTGCA TCACTTGGTT
GATGATAAGA TTCACGCACG TTCCACTGGT CCTTACTCCA TGATTACCCA GCAGCCGTTG
GGTGGTAAGG CTCAGTTCGG CGGTCAGCGC TTCGGCGAAA TGGAAGTGTG GGCGCTCGAG
GCTTATGGTG CTGCTTACAC ATTGCACGAA ATGATGACTA CGAAGTCTGA TGACGTCGAC
GGTCGCGTGC GCGTGTATGG TGCTATCGTC AAGGGCGATA ACCTGCCACC AGCTGGCATT
CCTGAATCCT TCAAGGTGTT GCTTAAGGAA ATGCAGTCGC TTTCCCTTAA TGTTGAAGTG
TTGAACGCTG AAGGCGTTGC AATCGACATG AAGGATGAAG AGGACGACCC AGTTTCATCT
TCCGACGATC TTGGCTTCAA TATTGGCGCT CGACCAGATT CGTCCGCCAA GGAAGATCAG
ATTGCTGTTG AACCTGAATA CCAGTGA
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| Protein sequence | MAAEQAMTST TKVIARADEH DIKLHKASDR VNFGSICEPI DVPYLLGVQT DSFDWLIGSE
RWKKRVAEDE ANGTHTVPHV SGLDEVFQEI SPIENFAETM SLTFSDPYFE EPRHTVLECK
EKDYTYSAPL YVNAEFENGE TGEIKSQTVF MGDFPLQTPH GTFIIGGTER VIVSQLVRSP
GVYFDRTQDR TSDKDVFGAK IIPSRGAWLE FEIDKRDVLG VRVDRKRKQS AIVFLMAIGM
TKDEIADAFQ GYPLVLDALA KEPIETQDDA LTDLYRKIRP ADTATPEAGR NLLDSFYFNT
KRYDLARVGR YKINRKLGIE ADYSDRSLNR EDIIATIKYL VTLHSGEKTF PGKRDGQDVQ
LRVDVDDIDH FGNRRIRQVG ELVQNQLRTG LSRMERVVRE RMTTQDAEAI TPQSLINIRP
VNATIKEFFG TSQLSQFMDQ NNPLAGVTNK RRLSALGPGG LSRDRASMEV RDVHPSHFGR
MCPIESPEGP NIGLIGSLAT FGRINPFGFI ETPYRKVVNG HVTNEVEYMT ADREAEHVIA
QANQELDENG NFVGTQALAR VDEEEAVDVP VSTVDYMDVS PRQMVSLGAS LIPFLEHDEG
HRALMGTNMQ RQAVPLIKSE RPLVGTGSEW RAAVDSGDVI LAEKPGVVTY VSADIIRVMN
DDGTQSSYKL SKFQRSNQTT CYNQVPLIKD GERVEAGTVL ADGPATEKGE LALGKNLLVA
FMPWNGYNYE DAVIISQRLV QDDTLSSIHI EEYEIDARET KLGSEEITRD LPNVGEDAIA
NLDERGIIRI GAEVEAGDIL VGKVTPKGET ELTPEERLLR AIFGEKSREV RDTSLRVPHG
ETGTVIAVKE ITREDAEDDG DELPNGVNQM IRVYIAQHRK ITQGDKLSGR HGNKGVISRI
LPEEDMPFLA DGTPVDIMLN PLGVPSRMNL GQVLELHLGW IAHAGWDINL DSDLEAAWKK
YVPQGAEHGD PCTPVATPVF DGVRPETLKG LLSTTLANRD GDKLVGSDGK ATLFDGRTGE
PFPKPISVGY MYILKLHHLV DDKIHARSTG PYSMITQQPL GGKAQFGGQR FGEMEVWALE
AYGAAYTLHE MMTTKSDDVD GRVRVYGAIV KGDNLPPAGI PESFKVLLKE MQSLSLNVEV
LNAEGVAIDM KDEEDDPVSS SDDLGFNIGA RPDSSAKEDQ IAVEPEYQ
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