| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1168 |
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| Symbol | rpoC |
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| ID | 8709391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1364510 |
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| End bp | 1368529 |
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| Gene Length | 4020 bp |
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| Protein Length | 1339 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 646483258 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_003374366 |
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| Protein GI | 283783612 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000253907 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCTGGACG TCAACGCATT TGACAAACTG AGGATTGGAC TGGCCACCGC CGAAGATATC
CGTAGCTGGA GCCACGGCGA AGTAAAGAAG CCAGAAACCA TTAATTACCG TACCCTAAAG
CCAGAGAAGG ACGGTCTGTT CGGTGAGCAG ATCTTCGGTC CAACTCGCGA TTGGGAGTGC
GCGTGTGGTA AGTATAAGCG CGTGCGCTTT AAGGGAATCG TGTGCGAGCG ATGCGGCGTG
GAAGTTACCC GCAGCCGCGT TCGCCGCGAA CGCATGGGTC ATATTGAGCT TGCAGCTCCG
GTAACGCACA TTTGGTTCTT CAAGGGTGTG CCAAGCCGTT TGGGCTACTT GCTCGACATT
GCACCTAAGG ATCTTGAAAA AGTAATCTAC TTCGCAGCCT ACATGGTTAC GAAAGTCGAC
GAAGAACAGC GTCATCAAGA TCTTCCAGAT TTGCAAGACG AATTCGATAC CGAAATCGGC
AACCTTCGCA AGCGCCGCGA TAACGAAATT GAAGCGCGCG CAAAGAAAGT TGAAGAAGAC
TTGCACGAGC TGGAAGAATC TGGCGAAAGC AAAGGTGCTG CAAAATCTAA GCTGCGCGCT
AGTGCAGAAC GCGAAATGTC TGCTATTCGC ACCCGTTACG ACGAGCAGAT TCAGCGTTTG
AATGCCGTGT TCGACCGCTT CAAGGGCTTG CGTGCCGGAG ACATGGAAGG CGACGTTGAC
TTGTGGCGCG AGATGGAAGA TCGCTACGGT GACTACTTCG AAGGCTGCAT GGGTGCTGAA
GCTATTAAGA AGCGTTTGCA GGACTTCGAT TTGAAGTCTG CCGCAGAGGA GCTTCGCGCA
GAAATCGACA ACGGAACCGG TCAGCGCAAG GCTCGCGCTT TGAAGCGACT GAAGGTTGTA
AACGCATTCT TGACTACTGG AAACAAGCCA GAAGCTATGG TTTTGGACGT AATTCCAGTA
ATCCCACCAG ATTTGCGACC AATGGTTCAG CTCGATGGTG GTCGTTTTGC AACTTCCGAT
TTGAACGATT TGTACCGTCG CGTAATCAAC CGTAACAACC GTTTGAAGCG ACTTATTGAG
CTCGGCGCTC CTGAAATCAT GCTTAATAAC GAAAAGCGCA TGCTTCAGGA AGCAGTCGAT
TCGCTCTTCG ACAACGGTCG CCGCGGACGC CCAGTAACCG GCGCATCCAA CCGACCATTA
AAGTCGCTTT CCGACATGCT TAAGGGTAAG CAAGGTCGAT TCCGCCAGAA CTTGCTCGGT
AAGCGTGTTG ATTACTCCGG CCGTTCCGTA ATCGTCGTTG GTCCAAGCCT TCGCATGCAT
CAGTGCGGTT TGCCAAAGCC AATGGCATTG GAGCTGTTTA AGCCGTTCGT TATTAAGCGT
TTGGTAGATC AGGGCTTTGC TCAGAATATG AAGAGCGCAA AGCGTTTGGT TGACCGCGGC
GACTCCGAAG TTTGGGGCGT GCTCGAGGAA GTTATTTCCG AGCATCCTGT GCTTCTTAAC
CGCGCACCTA CACTTCACCG CTTGGGTATT CAAGCATTTG AGCCAATTTT GGTTGAAGGT
AAAGCAATCC ACCTGCCACC ACTTGCCTGC GCAGCATTCA ACGCAGACTT CGATGGTGAC
CAGATGGCAG TGCATCTTCC GCTTTCTGCC GAAGCTCAAG CCGAAGCTCG TACTTTGATG
ATGGCTTCCG ACAATATCTT GAAGCCAGCA GACGGTCACA CCGTTACAAT GCCTTCTCAG
GATATGATTC TGGGTCTTTA CTACTTGTCT ACCGTAATTG ACGAAGCAAA AGGTCAAGGT
CGAATCTTCT CCTCGCTTGC TGAAGCTGAA ATGGCTCTCG ACAAGCATGA GATTGACATG
CAAGCTAAGG TGCTGATTCG AGTTCCTGCA GACTTCGTAT TGCCAAAGAA TTGGGAGCCT
GCTGAGCTTA AGGTTGTTGA CCCTGAGCCA GGCAGCCCGG ACGTTGTGCG CGAAGAGCGT
TTTAAGGACG GAACTGTACT GTTTGCAACT TCTTGCGGAC GCATTTTGTT CAACGGAACT
TTGCCATTCG ACTATCCGTT CGTAAACGAG CAGGTGCCAA AGGGCGTACT TTCTAAGATC
GTCGACGAAA TCGCAACCCG CTATTCTACA GCTCAAGTTG CAGCAACACT CGACGCTTTG
AAGGATCTCG GCTTTACTCG CGCTCCTTGG TCTGGCGTAA CGATGGCATT CTCCGACATT
GTTCTTCCTC CAAATCGCGA ACAAATCGCG CAAGATTACG AGGATCAGGC TGCAAAAATC
AACTCCCAGT ACGATATGGG TCTTCTTACC GACGAAGAAC GTCGTCAAGA GTTGATCAAC
TTGTGGACTG AATGCACCGA CAAGGTTGCA GACGCAATGC GCGAAAACTT CCACGACGAC
AACAACGTGA ACATCATGGT TCAGTCAGGC GCACGTGGTA ACTGGATGCA GATTCGCCAG
ATTGCTGGTA TGCGAGGCCT CGTGGCAAAC CCTAAGGGCG AGATTATTCC TCGACCTGTT
AAGTCAAACT ACCGCGACGG CTTGTCCGTG TTGGAGTACT TCATCTCCCA GCACGGCGCT
CGTAAGGGCC TGGCAGATAC CGCACTTCGT ACGGCAGAAT CTGGCTACTT GACTCGTCGT
CTTGTGGACG TTTCGCAGGA AGTAATCGTT CGCGAAGAAG ATTGTGGCAC TAAGCGCGGT
CTTATGATGA AGATTGCTGA TCACGACGAA AACGGCAATT TGACGCTTGT TAAGGCTGCT
GACGGTGGCC CATACTCGCG CTTGCTTGCT GCAGACGTAA TTGACCCTGC CGACGGTACA
ACAGTTTTGG CAAAGTGTGG AGACGCGCTT TCTATGGACG TTTTGCGTGA TTTGGTTGCG
CACGGCGTTG AGGAAGTTAA GGCGCGTTCT GTGCTTACTT GCGAATCCAA GCGTGGTGTT
TGCGCAAAGT GCTACGGCTG GTCCTTGGCT ACGAGCCGAC TCGTGGATGT TGGCGAGGCT
GTTGGTATTG TTGCAGCACA GTCCATTGGT GAGCCTGGTA CGCAGCTTAC GCTTCGTTCC
TTCCACTCCG GTGGTGTTGC TTCTGCTTCC GATATTACGC AGGGTCTTCC TCGTGTTACG
GAGCTTTTCG AGGCTCGTAC TCCTAAGGGC GAGGCTCCAA TTGCTGAGTT CCCAGGCGTT
GTGAAGGTTG AGGATACCGA CCACGGCCGT CAGGTGACTT TGACTCCAGA CGACACAACC
GTTGAGCCAA TCGTTTACCC TGTGACGCGT CGTGCGCCAA TGCTGGTAAA GGATGGCGAG
CATGTTGACG TTGGTACGCA GCTGATTGAA GGTTCTGTGG ATCCTAAGAA GATTCTTCGA
ATCCTTGGTC CGCGTGCAGC TCAGGTAAAT ATTGTGGAAG AGGTTCACAA CGTTTACCGT
TCTCAGGGCG TTGATATTCA CGATAAGCAC ATTGAAGTTA TTGTGCACCA GATGCTTCGC
CGTATTACGG TGATCGATTC TGGCGATACG GATCTTCTTC CAGGTGAGCT TGTGGATCAA
GCAAAGTTCC GCGAGGCAAA CTTGGCTGCT GTAAAGAACG GCGGAAAGCC TGCTGCTGGT
CGACCAGAGC TTATGGGTAT TACCAAGGCT TCGTTGGCTA CGGATTCTTG GCTTTCTGCA
GCATCGTTCC AGGAGACTAC GCGCGTGCTT ACTGAGGCCG CCTTGAGCCA GAAGGAAGAT
GACCTTAAGG GCTTGAAGGA GAATGTGATT ATCGGTAAGC TCATCCCAGC TGGTACCGGT
TTGGCGCGTT ACCGCAATGC TAATGTGGAG CCGGATCCTC AAGTTCGCGA CTCTATTTAT
CCAAACTTCG GTTTGGGCGG TGCGGATAGC ACGCCTTCGA ACTTCGGTGA GAGCGATATG
GGTGATGTTG ACTTCTCCAA CATTGATTTT GGCGATATGA AGCTCGGCGA CGACTTTAAT
CCAGATGACT TCCTTGACGA TCAGGGTGGT CAGAGCGATT ATGGCGACGA AGCTGAGTGA
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| Protein sequence | MLDVNAFDKL RIGLATAEDI RSWSHGEVKK PETINYRTLK PEKDGLFGEQ IFGPTRDWEC
ACGKYKRVRF KGIVCERCGV EVTRSRVRRE RMGHIELAAP VTHIWFFKGV PSRLGYLLDI
APKDLEKVIY FAAYMVTKVD EEQRHQDLPD LQDEFDTEIG NLRKRRDNEI EARAKKVEED
LHELEESGES KGAAKSKLRA SAEREMSAIR TRYDEQIQRL NAVFDRFKGL RAGDMEGDVD
LWREMEDRYG DYFEGCMGAE AIKKRLQDFD LKSAAEELRA EIDNGTGQRK ARALKRLKVV
NAFLTTGNKP EAMVLDVIPV IPPDLRPMVQ LDGGRFATSD LNDLYRRVIN RNNRLKRLIE
LGAPEIMLNN EKRMLQEAVD SLFDNGRRGR PVTGASNRPL KSLSDMLKGK QGRFRQNLLG
KRVDYSGRSV IVVGPSLRMH QCGLPKPMAL ELFKPFVIKR LVDQGFAQNM KSAKRLVDRG
DSEVWGVLEE VISEHPVLLN RAPTLHRLGI QAFEPILVEG KAIHLPPLAC AAFNADFDGD
QMAVHLPLSA EAQAEARTLM MASDNILKPA DGHTVTMPSQ DMILGLYYLS TVIDEAKGQG
RIFSSLAEAE MALDKHEIDM QAKVLIRVPA DFVLPKNWEP AELKVVDPEP GSPDVVREER
FKDGTVLFAT SCGRILFNGT LPFDYPFVNE QVPKGVLSKI VDEIATRYST AQVAATLDAL
KDLGFTRAPW SGVTMAFSDI VLPPNREQIA QDYEDQAAKI NSQYDMGLLT DEERRQELIN
LWTECTDKVA DAMRENFHDD NNVNIMVQSG ARGNWMQIRQ IAGMRGLVAN PKGEIIPRPV
KSNYRDGLSV LEYFISQHGA RKGLADTALR TAESGYLTRR LVDVSQEVIV REEDCGTKRG
LMMKIADHDE NGNLTLVKAA DGGPYSRLLA ADVIDPADGT TVLAKCGDAL SMDVLRDLVA
HGVEEVKARS VLTCESKRGV CAKCYGWSLA TSRLVDVGEA VGIVAAQSIG EPGTQLTLRS
FHSGGVASAS DITQGLPRVT ELFEARTPKG EAPIAEFPGV VKVEDTDHGR QVTLTPDDTT
VEPIVYPVTR RAPMLVKDGE HVDVGTQLIE GSVDPKKILR ILGPRAAQVN IVEEVHNVYR
SQGVDIHDKH IEVIVHQMLR RITVIDSGDT DLLPGELVDQ AKFREANLAA VKNGGKPAAG
RPELMGITKA SLATDSWLSA ASFQETTRVL TEAALSQKED DLKGLKENVI IGKLIPAGTG
LARYRNANVE PDPQVRDSIY PNFGLGGADS TPSNFGESDM GDVDFSNIDF GDMKLGDDFN
PDDFLDDQGG QSDYGDEAE
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