| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1159 |
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| Symbol | thiD |
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| ID | 8708840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1346344 |
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| End bp | 1347264 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 646483249 |
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| Product | phosphomethylpyrimidine kinase |
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| Protein accession | YP_003374357 |
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| Protein GI | 283783603 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase |
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| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00675994 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGACGCTAG TATCAAGCAA ACAGCATGAC TTGCAGCATG CGCAATCGCC TATGCAGCAA
TCAGACCCAA TCATTCCGCG CGTGCTAAGC ATAGCTGGCA CAGACCCAAC AGGTGGAGCC
GGAATACAGG CAGATCTCAA GTCAATTATG GCGGCAGGCG GTTATGGCAT GTGCATACCA
ACTAATTTGG TTGCGCAAAA CACGTGCGAA GTGCGCGAAG TATTCACGCC GCCAGTAAGC
TTTTTCCGCA CTCAACTTTC ATGCGTGTAC GACGACGTTA CAGTTGACGC ACTAAAAATC
GGCATGCTTG GATGCACAGA ATATATTGAA GCATTGCGAG ACTGGATGTG CGATAACCCG
GTTCCTGTAA GTGTTCTAGA CCCGGTGATG ATATCAACTT CCGGGAAGCG CTTGCTTGAG
GCGAGTGCTG AAAATGCGAT GCGAAACTTT ATAAGCTGCG TTGATGTAGT GACGCCAAAC
GTGCCGGAAT TGGCGGCTTT GTGCGAATCG CGCGTTGCGG AAAACTTTGA GGAAGCTTGC
AACCAGGCGC GCAAGTTGGC TGCAAAAAAC AGTGTTGTTG TAATCGTAAA AGGTGGGCAC
TTAACTAGCG AAGACGTTGG AAATACTGCG GTTTTCCCGG ATGGTGACGC GCGGCACGTA
CCAAGCGAAC GAGTTGAAAC AAGCACAACT CACGGAACTG GTTGCTCGCT TTCTTCTGCG
CTTGCTACGA AAATTGGGCT TGCTTTGCGC GAGGAAAAGA ATTTGAGCAA TCACGATACT
GTACTTTGCG CACTTGAATG GTCAACGGCG TGGCTTCGAG AGGCGATTGC GGCTGGAAGT
GAATTACATG TTGGGTGCGG CGGCGAGCGC GGTCATGGAC CTGTAAACCA CTCCGTGCGA
ATCTTGCGGC AAACTGCGTG A
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| Protein sequence | MTLVSSKQHD LQHAQSPMQQ SDPIIPRVLS IAGTDPTGGA GIQADLKSIM AAGGYGMCIP
TNLVAQNTCE VREVFTPPVS FFRTQLSCVY DDVTVDALKI GMLGCTEYIE ALRDWMCDNP
VPVSVLDPVM ISTSGKRLLE ASAENAMRNF ISCVDVVTPN VPELAALCES RVAENFEEAC
NQARKLAAKN SVVVIVKGGH LTSEDVGNTA VFPDGDARHV PSERVETSTT HGTGCSLSSA
LATKIGLALR EEKNLSNHDT VLCALEWSTA WLREAIAAGS ELHVGCGGER GHGPVNHSVR
ILRQTA
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