| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1155 |
|---|
| Symbol | |
|---|
| ID | 8709699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1343479 |
|---|
| End bp | 1344276 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 646483246 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003374354 |
|---|
| Protein GI | 283783600 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0848999 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAACG ATTCCATGCT AGAACAAAAG ACTCCGCTCA CAGCGCGCGA ATACGCGACG
CGCACAGCAA TACGTGCGAT TGCAATCATC GCATCTGTTT ATGGTATGGC TGCTTCGTGG
GAAGGCTTAA TGACCTTCAC TTATTTTACG AATCTTTCTA ACCTGATGAT TTGCGTAGCT
CTTGCTGGAT CGCTTTTGCT TGATACAGCT GCGTTTATGC GTGCTCGTAA TTCTGTAGAT
TCAGCATCGC AGCAAGATTC CGCAGCATCT TGCGCATGGT TCGACTCAAA ATCCAACGCT
TGGTACATTT TCAAATTCAT GATGACTATC TCAATTGCTG TCACATTCAC TTTGTACCTG
TGTTTCTTAG CACCTACCAA TAAGCTTGGT TTCGTTGGCG CTTACATGAA TAACGGATGC
AGCAGCCTTT GCGTTCACGC AGTTGCGCCG CTTCTTGCAA TCGCTGATTT TGTGCTTTTT
GATTATCGTT TCCACTCTAC TCGCGCACAT TTGTATGTTT CTACTGTTCC GCCTCTTGCT
TATGTTGCTT ATGCTGCTAT GCTTAGCGAG TTTGCTGGTG TTCGTTGGGG TGTTCATGCA
ATGCGCGCGC CTTATAATTT CCTCAATTAT GGCGCTCCTG CTGGCTGGTT CGGCTTCGCA
CCGCAAACTT TTAATGCCAC TACTTTGGGC GTTGGAGTTG CGTATTTGTT AATTGTGTTT
ACTCTTATTT TTATTGGTGT CGGCAGTGTA TTTCTTGCGC TTAAGGATGC TCGCGCTCGT
GCAATATTAA AAGAATAG
|
|---|
| Protein sequence | MANDSMLEQK TPLTAREYAT RTAIRAIAII ASVYGMAASW EGLMTFTYFT NLSNLMICVA
LAGSLLLDTA AFMRARNSVD SASQQDSAAS CAWFDSKSNA WYIFKFMMTI SIAVTFTLYL
CFLAPTNKLG FVGAYMNNGC SSLCVHAVAP LLAIADFVLF DYRFHSTRAH LYVSTVPPLA
YVAYAAMLSE FAGVRWGVHA MRAPYNFLNY GAPAGWFGFA PQTFNATTLG VGVAYLLIVF
TLIFIGVGSV FLALKDARAR AILKE
|
|---|
| |