| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1153 |
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| Symbol | |
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| ID | 8708956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1334653 |
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| End bp | 1338846 |
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| Gene Length | 4194 bp |
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| Protein Length | 1397 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646483244 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_003374352 |
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| Protein GI | 283783598 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.546412 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGATA AAACAAATAA GCAATTTACT CGCAAGAACA CCGATAGCGC GGAGCAAGCT
GCAGCAATTC AAGCACCAAC AAATAAGAAC ATGATTATTG TTGCAGGAGC TGGAAGCGGC
AAAACGTATA CGATGACTCG TCGAGTTATC GACCTTATTG AGCGCGGAGT TGCTCCTGAA
AGTATTTTGG GTTTGACTTT TACTAATAAA GCAGCTTCTG AGCTGCTTGC AAGAGTTGCT
CAAGCTGTAA GTCAGCATAG TAGCGAAATA AATAAGCTTA TCAATAACGG AAATTCCGCA
TCTTCAAGTG GCTTTTTGAA GCCAGAAGTA ATGACATACG ATGCTTTTTT CCAGTCAATT
GTGCGCCAAT ATGGTTTGCT TGTTGGATTT GATCAAAATA CGCAACCTTT AAGCGATGCA
GGTGCGCGCG AATTAATAAA ACCGCTAGTA AACGATTATG TTACTAATCA TGCGGAAGTG
CTGTCTTGGT ATAGTTTTGA TGCGCTTATT GACGACGTGC TTGCGCTCGC AGCAGATATT
TCATGCTCGA TGATTGGCAT AAATAGCAGG GGAGAGTCTA TAGATAGCAC GTCTAAAGCT
ATTTTAGAAA TTCAGAAGTG GAATAACGCT TGGATTGAGC ATTTGCAAAA AGCAATTAAT
TGTGCTGAAA CTACTGAAAT AATTGCAAAA AAGCCTAGCT CTATTAAATT GCGTCGCGGA
AAAAACGATT CAGATGAAAA ATATTTCGAA AAGTGCGAAA ATTACGGAAA AGAATACGTA
GAATACCTGA ATATTACATT AAAAAATAAG TGTTATGAAT CTTGTAATAA CTTGCTTGAA
GCTGCTGAGA AGCGCAATGT ATTACTTGAA TTAGTTTTGG CTTTTGACGC AGCAAAGCAG
CGCGCAAATA TGGCGCAATT TAGCGATTTT ACTATTGCTG CATACCGTTT GGTGACGCAT
TTTCCTTCTA TTGCAGAGCA GTATCGCCGC CAATACAGCC AAGTTTTGCT TGATGAATAT
CAAGATACTT CTACAACTCA AGCAATGCTG ATTGCAACGC TGTTTCATAA AAAAACTAAC
GGTGTGGAAG AAGCTAGCGT TGCTGCGAAA ACTAGTGAAA ATCAAGACTT TTTAACTACT
CAACAAACGA ATATTGCTGC AGTAGGTGAT CCGTTCCAAG CTATTTACTC GTTTAGAGGA
GCTAGTTCCG GAGCTTTCAG AAAGCTTGAG CAAGCACTAA ATATCGACCA GTCAAGTGAG
TTTTCTCTTA CTAGAACGCG ACGCAATTCG CAGCTTATTT TAAAAGCTGC AAATTCTATT
ACGAAACCTT TGCGAGTGCC TGCGCTTCGC CATAGTAGTT CACTTGCTAC AGAAGTAGAA
GTGAAAAACT TGCAATACTT AGATAATGCA CCAAAAGGTA CTTTTAGTGT GTTAAATATG
CCTACGCAAT ATCAAGAAGT AGAAGCCGTT GTGCGTTTTG TAAAATATGT AAAACATAAT
GCGCTATCTG AAAACGACGA TACTAATTCT GCATCTGCTC GAGTTGCAGT TCTTTTCCGT
AGCAAAAATA ATATTCCGTT ATATGAAGAA GCATTACAAA AAGCAGGTTT ACGCACTCTT
ACTGTTGGGT ATTCTGCATT GCTTGAAAAA CCAGAAATTC GAGATGTTTT AGCTCTTCTT
TCTGTTGTTG CAGATCACAC AAATACTCAA GCTTTGATGA GATTGCTTGC AACTCCTCGT
TTTGCGCTTA ATACTGACGA TTTGGCTGCT ATAGCTAATA TTGCAACATC AAAGAATATC
GAATATGTTT TTCGTGCTTT AGTGCAAGCA GGTTTAGTAA ACGCTGAAAC TCCTCGCTCT
AAGTGGTCGC AAGTTGTTCG AGAACAGCAA TCTCAAGCTT CGCAAACCAA TAGTATTCAT
GGTGGAGTTT TTGTGGCGGA TGTTTTGCTT GAAGCATACG AAACGCAACT AAGCGAAGAA
GCAAAAAATA ACGACAACAA TAACAATAAT TTGCTTTTTG AGCTAAAAAA TAATTTAAGC
TCTAAAGCTT ATATAGCAGT GTTAAGAATA GGGCAAATGA TTCATGCAAT ACAACGTGCT
CAATCTGGCT CTTTGCAAGA TATTATGCGC GTTGCTGTAG AAACGCTTAA CGTTGATATT
GACGTTGCGC TATCTCGTGC GCTTATGAAT GATACTTCCT CTAATGCAAC GCTTCTTGAC
GATATGCACT CTACTGTCGA TTCTATTTGT TTACTAGCAG ACGCGTATTT GCAAGAAATG
AGCGATTTTA CAACTCCTAC TTTGCATGGG TTTATGTCTT GGATTTTCAA TATAGACAAA
ATTAACGATC AACCTTCTTC AGTGGATGAG GCTGCGGATG TCGTATTGAT GACTATTCAC
CAATCGAAAG GTTTGGAATG GCCTGCTGTA GCGATAGTTG GGCTTAATGA AGGCGCGTTC
CCAAGTAATC AAGGCGATAA TTTGCGCGTA ATAGCAACGC AACAAAGTGG CGTGTACAGG
GAAAGGGCAT ACGCAACGCT CGAAGTTGCT TCAAAAGTGC CTGTTTCTAT GAGAGTGGAT
GCAAACATAT TGCCAAGATT CCCTCACGAT GTTGATCTTG AAACTAGCAT GGAACCTCAA
AAATCTTTGA AAAATATGTT AACTGTAGAC GATATCGACG CAGAAGTTTA TGGATCAAGA
GCTAGAGAAA TGTTTGATTT GGCAGAAAAA TTCCATGAGC ATGAGCAGGC TCCAGTAGAA
GCGATTCCTT CAGAAGCTAG CAAAGTGTAT GACGCTGTGA TGAAAACTGG CACATTGCCT
CTTTCACAAG TCGAAGAGCG TGGGCGCGCT TTGCATATTG ACGAGCGTCA CCTTATGTAT
GTTGCTTTGA CGCGTGCTAA ATTCGCAGCA TTGCTCACTT GCAGCCAGTC TAATGCTATG
AGCGTTGTTG AGAATAAAGA AAATTTTGCC AATAGTGCAG CTTCTTCTGT AGATGAATCT
TCAAATATTT CAACTTCTAG AGTTAAAAAA CCTTCTGTTT TTTGGCAGGA AATGTATGAT
TCAATGCGCG GATCTGAAGA ATCTCCGGTT CAGGTCACAG CTAAGGTTTC AGATTCTTCA
AATCAAGTAG GTTATGTTGT AGGGGAGTCA GCTTCGCAAC TTGCGCAATT ATTTAGCGAG
GAAAGCACTA TTCCAACTGA AGATAATGAG AAACAATTAT CTTGGCCGAG TGCATCTAGT
GAAGCTATAC GTAGTGTATT GCAAAAATCT GCGCAAGACG TTGTAAATTC AAAAATGAGT
AATCAAATTT CTGGTATTTC AAAAGATAAT TCTTTGCTTT ACAAAGCTCA AGCTTTGCTA
CAAGATGCAG ATTTAATGCC GAAAATTGAT TGGTATCACA ACATTCAAGA GTTGAAAAAC
AGAGCAGAGC AGCTTTCTAA TGTTGAAAAT GTCAATGTGA CTGCTGTGCA AAGACGCGCT
ATGTTTCGTA ATGATTATTC GCGCGCGAAT GAAGATTTTA ATGATGCGGA TGCTAAGCGT
TTGCGGAAGG AATGGATGGC AATTATTCGC CCTATTCCTA GCGTTTCTTC GCCTGCTTCT
GATTTGGGAA CGCGTTTTCA TGCTTGGGCT GAACAGTTTG TAAAAGCTGG TTGCGTGAAT
AAAAATTCTA TTCAGTATGA CGTTGATGAG ACTGCTGTTG AAAACGTTGC TGAAACTTGC
GAGAATATTT CGCAAAATGC AAAATCTTCG GAGCGCAAAT TGTTGATATG GAAGCAGCGT
TTAATAACAT CAAAATGGGC GCATCGCCGT CCTATAGCAG CAGAGCAGCC GATTGTAGCT
CATGTTCCAG AATTAGGCGA TCAAATTATT AATGGCAAAA TCGACGCAAT ATTTGCAGGT
GGTTTAAATC CAGAAGATCC AAGCAAATTG TACACGATTG TTGATTGGAA AACTGGTAGA
AAACCGACCA AGCCGCAAGA TATTGCGCTT AAACTTGGCC AGCTTGACTG GTATCGTCTG
CTTTTGTCTC TTATGACTAA GGTTCCGCTT GATGCTATCG ATGCCACCCT TTATTATGTG
AACATATCGG ATGAATGTGA ACGGGAAATT CATGCCGAGC AAAAAACGAA AGATGAGATC
CTTGCCGAGT TACACTCTGA CACGTTAATC TCCCTCGATG ATGATGACGC ATAA
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| Protein sequence | MIDKTNKQFT RKNTDSAEQA AAIQAPTNKN MIIVAGAGSG KTYTMTRRVI DLIERGVAPE
SILGLTFTNK AASELLARVA QAVSQHSSEI NKLINNGNSA SSSGFLKPEV MTYDAFFQSI
VRQYGLLVGF DQNTQPLSDA GARELIKPLV NDYVTNHAEV LSWYSFDALI DDVLALAADI
SCSMIGINSR GESIDSTSKA ILEIQKWNNA WIEHLQKAIN CAETTEIIAK KPSSIKLRRG
KNDSDEKYFE KCENYGKEYV EYLNITLKNK CYESCNNLLE AAEKRNVLLE LVLAFDAAKQ
RANMAQFSDF TIAAYRLVTH FPSIAEQYRR QYSQVLLDEY QDTSTTQAML IATLFHKKTN
GVEEASVAAK TSENQDFLTT QQTNIAAVGD PFQAIYSFRG ASSGAFRKLE QALNIDQSSE
FSLTRTRRNS QLILKAANSI TKPLRVPALR HSSSLATEVE VKNLQYLDNA PKGTFSVLNM
PTQYQEVEAV VRFVKYVKHN ALSENDDTNS ASARVAVLFR SKNNIPLYEE ALQKAGLRTL
TVGYSALLEK PEIRDVLALL SVVADHTNTQ ALMRLLATPR FALNTDDLAA IANIATSKNI
EYVFRALVQA GLVNAETPRS KWSQVVREQQ SQASQTNSIH GGVFVADVLL EAYETQLSEE
AKNNDNNNNN LLFELKNNLS SKAYIAVLRI GQMIHAIQRA QSGSLQDIMR VAVETLNVDI
DVALSRALMN DTSSNATLLD DMHSTVDSIC LLADAYLQEM SDFTTPTLHG FMSWIFNIDK
INDQPSSVDE AADVVLMTIH QSKGLEWPAV AIVGLNEGAF PSNQGDNLRV IATQQSGVYR
ERAYATLEVA SKVPVSMRVD ANILPRFPHD VDLETSMEPQ KSLKNMLTVD DIDAEVYGSR
AREMFDLAEK FHEHEQAPVE AIPSEASKVY DAVMKTGTLP LSQVEERGRA LHIDERHLMY
VALTRAKFAA LLTCSQSNAM SVVENKENFA NSAASSVDES SNISTSRVKK PSVFWQEMYD
SMRGSEESPV QVTAKVSDSS NQVGYVVGES ASQLAQLFSE ESTIPTEDNE KQLSWPSASS
EAIRSVLQKS AQDVVNSKMS NQISGISKDN SLLYKAQALL QDADLMPKID WYHNIQELKN
RAEQLSNVEN VNVTAVQRRA MFRNDYSRAN EDFNDADAKR LRKEWMAIIR PIPSVSSPAS
DLGTRFHAWA EQFVKAGCVN KNSIQYDVDE TAVENVAETC ENISQNAKSS ERKLLIWKQR
LITSKWAHRR PIAAEQPIVA HVPELGDQII NGKIDAIFAG GLNPEDPSKL YTIVDWKTGR
KPTKPQDIAL KLGQLDWYRL LLSLMTKVPL DAIDATLYYV NISDECEREI HAEQKTKDEI
LAELHSDTLI SLDDDDA
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