| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1149 |
|---|
| Symbol | pepN |
|---|
| ID | 8709361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1327435 |
|---|
| End bp | 1330050 |
|---|
| Gene Length | 2616 bp |
|---|
| Protein Length | 871 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 646483240 |
|---|
| Product | membrane alanyl aminopeptidase |
|---|
| Protein accession | YP_003374348 |
|---|
| Protein GI | 283783594 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0308] Aminopeptidase N |
|---|
| TIGRFAM ID | [TIGR02412] aminopeptidase N, Streptomyces lividans type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGGAG CAAATCTGAC TCGCGTAGAA GCTCAAGAGC GTTTCGACGC TATCCAAATG
CCAATTCATT ACGATGTTGC GCTTGATTTA GGAAAGGGCG GCCGCGATTT TAAGTCGCGC
ACAAAGATTG AGTTCGATGC TAAAGCTGGT AGCGCAAGCT TCCTCGATTT AATTGCAAAC
AGCGTAGAAT CCGTGGTGTT AAACGGTGCC GATCTTGACG TTTCTAAAGT TTTTGCAGAC
AGCCGAATTG AGCTTGCAAA TTTGCTGGAG CATAATACCG TAGAAGTTGT AGCAAATTGC
CAATATTCCA ACACGGGCGA AGGCTTGCAC AGAAGCGTCG ATCCTTCCGA CGGAAACGTT
TATCTTTACA CGCAGTTCGA AGTTCCGGAT GCTCGCCGCG TTTATGCTGT GTTTGATCAG
CCAGATTTAA AGGCTGTTTT TGACTTTAGC GTGGACGCTC CAGAAAGCTG GATTGTTACT
TCCAACATGC CAGCCGCCAG CGAAACCGTG CTTGAAGGCC GCAAGACGGA AGACGGCACT
TTGGAAAATG GCACTGTAGA AGGCATGAAG CGCTGGGTAT TTGAGCCAAC GCCAAAAATG
AGCTCCTACT TAACTGCTAT TTGCGCAGGT TCTTACGCCG AATGGCACAC AACTTACAAC
AATGAAGACG GTCGCGTAGT GCCAATGACA ATGTACTGCC GTCAGGCACT TAAAGACGCT
TTTGCAAAAG ACGTTGACTA CTTGTTCGAT ATTACGAAGA AGGGCTTTGC CTTCTACGCT
AAGACTTGGG GAGTGCCATA TCCGTACGCA AAGTACGATC AGATTTACGT TCCAGAATAC
AACGCTGGAG CTATGGAAAA CATTGGTATG GTTACCATTC GAGACCAGTA CGTGTTTGAA
TCCAAAGTTA CGGACGCTTA TGCTGAGCGC CGCGTTGTAA CAGTTTTGCA CGAGCTTGCG
CACATGTGGT TCGGCGACTA CGTAACTATG AAGTGGTGGA ACGACTTGTG GCTTAACGAA
TCCTTCGCAG AATTCACTTC TACTCTTGCC ACCGCTGAAG CAACTGAATG GCACGACGCT
TGGAGCACTT TCAATTCCGG CGAAAAAAGC TGGGCGCTTA ATCAAGATCA GCTTCCAACA
ACGCACCCAA TCGTGGCTCC AATCAACGAT TTGAACGACA CTTCCGTCAA CTTCGACGGC
ATCACTTATG CGAAGGGCGC CTCCGTTTTG AAGCAGCTCG TAGCTTACGT TGGTCGCGAA
AAGTTCTTTG AAGGAATCCA CAACTACTTG AGCAAGCATG CTTACAGCAA CGCTACTTTG
GCTGATTTGC TTCAAGAACT TGAGCTTACA AGCGGCCGCG ATTTGAAGGC GTGGAGTGCT
CAGTGGCTTG AAAAAGCTGG AATTAACACG ATTTCTACCG AAGTAGAAGA AGCAGGTGAC
GGCACTATTG CTTCCTTGCG TTTGCGTCAG AGCGCACCAG TTGAGCATCC TGTTCTGCGC
GCGCATCGCT TGGCTGTCGG ATTCTACAAT GTAGACGAAG CAACTGGCGA AATTAAGCGC
ACAAAGCGAA TCGAACTTGA CGTTGACGGC GAAGTGACGG AAGTTGTTGA AGCGTGCGGC
GAAAAAATGC CAGCACTTAT CCTTGTAAAC GACGACGACT TGACTTACAC AAAGCTACGT
TTTGACGAAA AGTCGCTTGA GTTTGCTGCA GAAAACTTGT ATCGTTTCAA GGATTCTTTG
ACTCGCTCGC TTATTTGGCT CACGTTGTGG GATATGACTC GCGACGCAGA ATTCCCAGCA
GAACGCTTTG TGGAACTGAG CCTTAAGGCC TTGGCAACCG AGCGTGAATC AACTACTTTC
CGCTATGCTC TTGGTCAAGT GAAAGTAACT GCAAGCCACT ACGTGGTTCC AGAGCGTCAA
GCAGAAGTCG CAAAGCATGT TGCTCACGAA TTGTGGCAGT TGGCTTTGGC AGCTTCTGCA
GGTTCCGACG AGCAATTCCA ACTTGTTAAG GCTTATCTTG GCTACGGTGA AGTTGGAGAT
GCTGAGTTTG TGCGTGTAGC TAACGGTTTG CTCGACGGTT CTGTGAATCT GGAAGGCTTG
GGAATCGACA ACGACTTACG CTGGAGCATT CTTATTGCGC TCGCAGGTGT GAACGCTTTG
GACGAAGCTG GAATTGACGC GGAACTTCAA AAGCGCGACA CGACTGAGAA TCGCGAATAC
GCTTACCAGG CTCGTGCAGC TCGCTCAACT GCAGAAGCTA AGGATTGGGC TTTTGAACAG
GCTTTGCGTA ATCTCGATTT GACGAATATG CAAATGGGCG CTGTGGTTGC TGGCTTTGCA
AGCACTGCTA AAGGCGATTT GGTTAAGCCT TACGTTGATC GCTACTTTGC TGAAGTTGAG
TGGATTTGGA AGAACCGCAC CTTCCACATG GCTGAAGCTT TGATCGAAGG CTTGTATCCT
GTGTATGCGC CGGTTGAGGA GCTGGTTAAG CACGGTGAAA AGTGGCTTGA GGCTCATGCT
GATGCAGATC AGGCTTTGCG TCGCATGGTG CTCGGCAGCC TTGATTCTTC TCGCCGCACG
CTTAAGGTAC AGCATTACAA CGCTTCCTTG TGCTAG
|
|---|
| Protein sequence | MPGANLTRVE AQERFDAIQM PIHYDVALDL GKGGRDFKSR TKIEFDAKAG SASFLDLIAN
SVESVVLNGA DLDVSKVFAD SRIELANLLE HNTVEVVANC QYSNTGEGLH RSVDPSDGNV
YLYTQFEVPD ARRVYAVFDQ PDLKAVFDFS VDAPESWIVT SNMPAASETV LEGRKTEDGT
LENGTVEGMK RWVFEPTPKM SSYLTAICAG SYAEWHTTYN NEDGRVVPMT MYCRQALKDA
FAKDVDYLFD ITKKGFAFYA KTWGVPYPYA KYDQIYVPEY NAGAMENIGM VTIRDQYVFE
SKVTDAYAER RVVTVLHELA HMWFGDYVTM KWWNDLWLNE SFAEFTSTLA TAEATEWHDA
WSTFNSGEKS WALNQDQLPT THPIVAPIND LNDTSVNFDG ITYAKGASVL KQLVAYVGRE
KFFEGIHNYL SKHAYSNATL ADLLQELELT SGRDLKAWSA QWLEKAGINT ISTEVEEAGD
GTIASLRLRQ SAPVEHPVLR AHRLAVGFYN VDEATGEIKR TKRIELDVDG EVTEVVEACG
EKMPALILVN DDDLTYTKLR FDEKSLEFAA ENLYRFKDSL TRSLIWLTLW DMTRDAEFPA
ERFVELSLKA LATERESTTF RYALGQVKVT ASHYVVPERQ AEVAKHVAHE LWQLALAASA
GSDEQFQLVK AYLGYGEVGD AEFVRVANGL LDGSVNLEGL GIDNDLRWSI LIALAGVNAL
DEAGIDAELQ KRDTTENREY AYQARAARST AEAKDWAFEQ ALRNLDLTNM QMGAVVAGFA
STAKGDLVKP YVDRYFAEVE WIWKNRTFHM AEALIEGLYP VYAPVEELVK HGEKWLEAHA
DADQALRRMV LGSLDSSRRT LKVQHYNASL C
|
|---|
| |