| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1135 |
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| Symbol | |
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| ID | 8708833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1309002 |
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| End bp | 1310792 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483226 |
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| Product | putative D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_003374334 |
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| Protein GI | 283783580 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAGTA ATAAAGGCTT AAACGATGCC TTAAATATTC CTAATGCGAG CACGCCAGCG
CAAAGCGGCG AACCCAACAA AAGTATCGAG CCTAAACCAA GTAGTGAAAA AAAACTAAGT
AGTGAATCTA AATCAAGCAG TGAGATTAAA CCAAGTAGCG CACAGAAGAA AAGTAAATAC
GCTGCTATGG TTTTAAGAAG CCAATATCCT TCTCGTTGGC GATTGCTTAT TGCATTTATA
GCAGTTATAG TTAGTGCAGC AATTATTTTT ACTTATTTTT TGCTTGACGT ATACGATATT
CTTCCTGGTC CTTTGACGTT GCGAAAACAA CATTATGCTG TAACTGTTTC TTCTCCTAAA
TCACTTTTGC GAGTTAAATC ACTAGCTAAA GGCGTGACTT ATGGTAGAGA AATAAATCAT
TCGCAAGCTC AAAAACTTAT TAACGAGTTG GTTTCCGATG CTTCTATGAG CAGCAGCACT
TCAGCAGTAA TTATGGATGC TAATGGGCGA GTAGTTGCTT CACATGAGCC AAATGCTTTA
AGAGAGCCAG CGTCAACGCT TAAAACTTTA ACTGCTAGCG TAGCTTCTCG CACTCTTGAC
ATGGGTTCAA CTCTTGATAC TCAAGTATTT TTGTTGCCTA AAACAGGCGG TATACCAGAA
CGAGCTTCTA GTACGAATGC TAGAAAGCTT GTGCTTCGCG GCAATGGTGA CATGCTTCTT
GGTGTTGGAG AAAACGATTG GCACCATGTT AATGGCAGAG CAGGTTTAAC GACATTAGCG
AGAAGAACAG CCAACGCGTT GAAGCTTGAA AATATTCACA CAGTTTCTTT AGCTGTTGAT
GACTCATTGT TTGGCGCAAA ACGTGCTCCT GATTTGATTT ATGAAACAGA TGTTGAACGT
CGCTTTTATG CTCAAACGTC ATCTTTGGCT ATAGATGATG CTCGTCAGCG TGACCTTTCA
GTGCAAGGTG TTGACGCTGA CGCTATGACA GATTTTCCGC TTTCTGATCC TCATCCTGCT
TTAAGTGTCG GTCATGTTTT TGCTAAATTA TTAAGCAAAC AAGGAATAGT TATAAGTAAT
TATTCTAATA AAACCGCTTC TGATGAAAAA AAATCCGGTT CAGGCTCGTC TGCAGATGAT
CCTTCTGAAA ACAATAAAGA TTCTGAAAAT GAAAATAAAT CTGCACAGTC TGAAAATCTT
GTCATACCAG TAAGCGAAAC TCAATCGTTA ATATCATCTA ATTCGCGTTT AATTGCACAA
GTTTCTTCTG CACCATTAAA CGAAATAATG GCATATACGC TTCGTATTTC AGACAACACA
TTGGCGGAAG AGTTTGGTCG TTTGACTGCG CTTGCAACTC ACAAATCCAA CTCTCCGGAG
GGTGCAGTTC AGGCAGTAAA AGAGGGATTG CGCAAGCTCA ATATCGATAT ACGTGGTTTG
CACATGTCTG ATTGCTCAGG CTTGTCTCCA AAATCAAGGT TGCGCGCAAC AACGCTAGCT
CAAGTACAAG TGCTTAATAT TAAAGCCGAT TCTGGAGGTG CTGCAGCTGC TGAAGGATTG
TCTCTTCCTG GTTTAGTTGG AACAGCAAGA AAGCGTTTAG CGGATGAATC TTCTGCCGGC
ATGCTTCGCG TAAAGACTGG TTCTTTAAGT GAAGTTACTT CTATGGTTGG TAATGTATCT
AGGAAAAATG GTGGAGTGCT AACTTTCGCT GTTGTTGCGA ACCAGCCAGC TGATATTTGG
GGAGCGTTCG TAGCGATTAA TAAGTTTATG GCAGAATTGC CAAAACTATG A
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| Protein sequence | MESNKGLNDA LNIPNASTPA QSGEPNKSIE PKPSSEKKLS SESKSSSEIK PSSAQKKSKY
AAMVLRSQYP SRWRLLIAFI AVIVSAAIIF TYFLLDVYDI LPGPLTLRKQ HYAVTVSSPK
SLLRVKSLAK GVTYGREINH SQAQKLINEL VSDASMSSST SAVIMDANGR VVASHEPNAL
REPASTLKTL TASVASRTLD MGSTLDTQVF LLPKTGGIPE RASSTNARKL VLRGNGDMLL
GVGENDWHHV NGRAGLTTLA RRTANALKLE NIHTVSLAVD DSLFGAKRAP DLIYETDVER
RFYAQTSSLA IDDARQRDLS VQGVDADAMT DFPLSDPHPA LSVGHVFAKL LSKQGIVISN
YSNKTASDEK KSGSGSSADD PSENNKDSEN ENKSAQSENL VIPVSETQSL ISSNSRLIAQ
VSSAPLNEIM AYTLRISDNT LAEEFGRLTA LATHKSNSPE GAVQAVKEGL RKLNIDIRGL
HMSDCSGLSP KSRLRATTLA QVQVLNIKAD SGGAAAAEGL SLPGLVGTAR KRLADESSAG
MLRVKTGSLS EVTSMVGNVS RKNGGVLTFA VVANQPADIW GAFVAINKFM AELPKL
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