| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1123 |
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| Symbol | |
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| ID | 8709896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1291870 |
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| End bp | 1293720 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646483214 |
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| Product | ABC transporter, ATP-binding protein |
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| Protein accession | YP_003374322 |
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| Protein GI | 283783568 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGAAA AGCCGAAGAA CAATTCACGA AAAATTAGCA ATAATTCTCC TCGCGCATTG
CGTACGATTC TGTTATCTTT AAAAAAGTAC CGTTTTCTTG GCGTTTTAAC AGTTGTTACT
ATTCTCGTTG AAGCTGCTAT GCAAATTGAG ATTCCTACAG TAATGTCAAA TCTTATTGAT
TTTGGCATTA TGTCACGTTC TCAAGAAGCT GTGCAATATT ATGGTTTGCA ATTGCTTATT
TTTGCTGCAA TTGCAATGAT TGCAGGCGTT ATTTCTGGTA TTTGTTGTGC GCATTCTAGT
GCTGGTTTCG GTAAAAATTT ACGTCACAAC ATGTTTTCAC GCTTACAAAG TTTAAGTTTT
TCTGATTTAG ATAAGTTTTC TAGCGGCACT GTTGTTACGC GTATGACTAG CGATGTGTCA
AATGTGCAAT TTGCTTACCA AATGATTATT CGCTCTGGTG TTCGCAGCGT TATGATTATC
ATCACTGCTT GGTGGTTTAC TTTTTCAATT AGCCCTGCTA TCTCGTGGGT TTTTCTTTCA
TTCGTGCCTA TTATTGGTGC AATTGGCGCT GTTGGAGCTA GTATAGTTGC TCCAGCATTT
TCTCGAATTT ATCGAATGAT TGACGAGATG AATAATAGAG TTGGCGAGAA TTTGCATAAT
ATTCGCGTCG TAAAGTCTTA TGTGCGTTCT GATTATGAAA TAAGTCGTTT TACGCGTATT
TCACATAAAA TCTATGATTA TTTTATTAAA GCTGAGTATG TGTTAAATTG TAGTATTCCT
TTGTTTAACT TATGTTTTTA TTCTGGCATG CTACTTATTG CGTGGTTGGC TTCGCACGAA
ATTGTGGCTT CGGGAAATAA TCCTGCTTTT GGTTTAACAA CAGGAAATCT TGCTGCATTA
GTAGTGTATG CTTTGCAAAT TTTGTTTGCT TTAGCGAATT TAGTTGCAGT TTTTGTAATG
TCGTTAACAG CTCGAGCTTC GATGCATCGT ATTTCACATG TTTTGCAATC TCGAAATACT
GAAGTTGTTT CCAAGCATCC GCTGACAAAG CTTTCTGACG CTTCTGTGCG TTTTGAAAAT
GTTTCGTTAC GCTATCCTCA ATCAGATAAT ACAGATGAAT CTGCCCCAGC AGAACAGGAA
ATTTTACATG ATATAAATAT ATCTATTCCT TCTGGAGCAA CTGTTGGTGT TGTTGGTGCA
ACGGGATCTG GAAAATCAAG TTTAGTGCAA TTAATTGCAA GACTTTATGA CGTAACTTCT
GGCACTCTTT TTGTAGGTGG AAAAGATATT CGCGATTATG ATTCTTCTAG TTTGCGTGGA
GAAGTTGGCG TTGTTCTACA AAAAAATATT TTGTTTAGTG GCACAATTGC AGAAAATCTT
CGCTGGGGTA GAGCGGAAGC AAGCGATGAT GATTTGCGTC AAGCTTGCGA AATTGCTTGT
GCTGATGAGT TTATTAAAGA TTTACCAGAT GGCTACAATA CGCATATTGA TCAGGGCGGT
AAGAATGTTT CCGGTGGTCA GCGACAGCGT TTGTGCATTG CGCGCGCACT TTTGAGGAAG
CCGAAAATTT TAATCCTTGA CGACTCGATG AGTGCAGTTG ATATGAAAAC TGATAGTAAA
ATTCGCGATG GCTTGAAAAA GTTTATGCCT GATTCTACGC AAATTATCGT TGCTCAGCGC
ATATCTTCAA TCGAACATGC AGATATTATT GTTGTTCTTA AAGATGGTCG TGTTGTTGCT
AACGGTTCGC ATGATGAATT ATTTAAGTCT TGTGAATTTT ACAGAAATAT GGCGATTTCT
CAAGAAAAAA GTAGCATAAC TGGCGCAACT AAAGAAGAAG GAGCTAAATA A
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| Protein sequence | MAEKPKNNSR KISNNSPRAL RTILLSLKKY RFLGVLTVVT ILVEAAMQIE IPTVMSNLID
FGIMSRSQEA VQYYGLQLLI FAAIAMIAGV ISGICCAHSS AGFGKNLRHN MFSRLQSLSF
SDLDKFSSGT VVTRMTSDVS NVQFAYQMII RSGVRSVMII ITAWWFTFSI SPAISWVFLS
FVPIIGAIGA VGASIVAPAF SRIYRMIDEM NNRVGENLHN IRVVKSYVRS DYEISRFTRI
SHKIYDYFIK AEYVLNCSIP LFNLCFYSGM LLIAWLASHE IVASGNNPAF GLTTGNLAAL
VVYALQILFA LANLVAVFVM SLTARASMHR ISHVLQSRNT EVVSKHPLTK LSDASVRFEN
VSLRYPQSDN TDESAPAEQE ILHDINISIP SGATVGVVGA TGSGKSSLVQ LIARLYDVTS
GTLFVGGKDI RDYDSSSLRG EVGVVLQKNI LFSGTIAENL RWGRAEASDD DLRQACEIAC
ADEFIKDLPD GYNTHIDQGG KNVSGGQRQR LCIARALLRK PKILILDDSM SAVDMKTDSK
IRDGLKKFMP DSTQIIVAQR ISSIEHADII VVLKDGRVVA NGSHDELFKS CEFYRNMAIS
QEKSSITGAT KEEGAK
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